Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77457 | Canola | cytosol | 86.31 | 86.47 |
| Bra015010.1-P | Field mustard | cytosol | 86.13 | 86.29 |
| CDX85176 | Canola | cytosol | 85.95 | 86.11 |
| KRH29101 | Soybean | cytosol, plastid | 72.26 | 69.96 |
| KRH24128 | Soybean | cytosol | 72.08 | 69.54 |
| PGSC0003DMT400047997 | Potato | nucleus | 72.26 | 68.63 |
| VIT_03s0038g03620.t01 | Wine grape | cytosol | 73.36 | 68.48 |
| Solyc01g111930.2.1 | Tomato | nucleus | 71.9 | 68.28 |
| TraesCS5D01G346100.1 | Wheat | cytosol | 57.85 | 65.5 |
| GSMUA_Achr3P14650_001 | Banana | nucleus | 67.88 | 65.49 |
| TraesCS5A01G340900.1 | Wheat | cytosol | 57.12 | 65.48 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 57.66 | 65.42 |
| GSMUA_Achr1P18140_001 | Banana | nucleus | 64.23 | 63.65 |
| Zm00001d006269_P001 | Maize | cytosol | 44.34 | 63.28 |
| GSMUA_Achr10P... | Banana | cytosol | 59.67 | 63.13 |
| Os09t0544800-01 | Rice | nucleus | 63.69 | 62.21 |
| EER99291 | Sorghum | nucleus, plastid | 63.14 | 61.9 |
| HORVU5Hr1G085510.1 | Barley | nucleus, plastid | 63.69 | 61.66 |
| Zm00001d021464_P002 | Maize | nucleus, plastid | 62.77 | 59.62 |
| GSMUA_Achr2P03580_001 | Banana | nucleus | 54.74 | 59.17 |
| AT5G02010.1 | Thale cress | nucleus | 47.08 | 47.25 |
| AT4G00460.2 | Thale cress | nucleus | 40.33 | 46.72 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 37.59 | 44.49 |
| AT5G05940.1 | Thale cress | cytosol | 46.72 | 41.9 |
| AT1G01700.4 | Thale cress | nucleus | 39.05 | 41.55 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 43.25 | 40.93 |
| AT4G13240.1 | Thale cress | nucleus | 38.14 | 40.43 |
| AT3G24620.1 | Thale cress | nucleus | 37.23 | 39.01 |
| AT1G79860.1 | Thale cress | nucleus | 35.58 | 37.86 |
| AT1G52240.1 | Thale cress | nucleus | 36.68 | 37.02 |
| AT5G19560.4 | Thale cress | mitochondrion | 34.12 | 36.52 |
| AT3G16130.1 | Thale cress | nucleus | 34.85 | 35.5 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 31.2 | 29.69 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:830000 | UniProt:A0A178UUK9 | ProteinID:AEE86928.1 | ArrayExpress:AT4G38430 |
| EnsemblPlantsGene:AT4G38430 | RefSeq:AT4G38430 | TAIR:AT4G38430 | RefSeq:AT4G38430-TAIR-G | EnsemblPlants:AT4G38430.1 | TAIR:AT4G38430.1 |
| Symbol:ATROPGEF1 | EMBL:AY056193 | EMBL:AY056375 | EMBL:AY084995 | EMBL:AY133649 | Unigene:At.2769 |
| EMBL:BT000462 | EMBL:BT000975 | ProteinID:CAB37499.1 | ProteinID:CAB80508.1 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009653 | GO:GO:0009856 | GO:GO:0009860 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0016324 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0065009 | GO:GO:0080092 |
| GO:GO:2000012 | GO:GO:2001108 | InterPro:IPR005512 | RefSeq:NP_195556.1 | ProteinID:OAO96854.1 | PFAM:PF03759 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0009062 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF6 |
| UniProt:Q93ZY2 | InterPro:RopGEF | UniParc:UPI00000AC2FE | SEG:seg | : | : |
Description
ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
Coordinates
chr4:+:17986384..17988869
Molecular Weight (calculated)
60851.2 Da
IEP (calculated)
5.234
GRAVY (calculated)
-0.401
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.