Factsheet for AT2G45890.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74772	Canola	nucleus, plastid	89.85	92.44
Bra004945.1-P	Field mustard	nucleus, plastid	91.79	92.39
CDY18892	Canola	nucleus	88.12	90.27
AT4G00460.2	Thale cress	nucleus	59.61	58.35
AT1G01700.4	Thale cress	nucleus	59.4	53.4
GSMUA_Achr5P20570_001	Banana	nucleus	53.78	51.66
VIT_15s0046g02530.t01	Wine grape	plastid	55.94	51.39
Os10t0550300-00	Rice	plastid	51.19	49.48
EER91970	Sorghum	plastid	50.32	47.65
Zm00001d002696_P001	Maize	cytosol	47.52	47.62
EES11256	Sorghum	nucleus	48.38	47.56
Os07t0481100-01	Rice	cytosol	47.08	47.39
TraesCS2B01G426300.1	Wheat	cytosol	47.52	47.31
Zm00001d029850_P001	Maize	nucleus, plastid	49.89	47.24
TraesCS1B01G222700.1	Wheat	plastid	48.6	47.07
TraesCS1D01G211900.1	Wheat	nucleus	48.38	46.96
TraesCS1A01G208700.1	Wheat	nucleus	48.16	46.75
TraesCS2D01G405400.1	Wheat	nucleus	47.3	46.6
TraesCS2A01G408100.1	Wheat	cytosol	47.08	46.58
TraesCS6A01G405000.1	Wheat	nucleus	45.79	46.39
HORVU1Hr1G053350.4	Barley	nucleus, plastid	47.73	46.23
Os04t0559100-00	Rice	cytosol	18.14	46.15
EER99384	Sorghum	nucleus, plastid	45.79	45.79
HORVU6Hr1G092860.2	Barley	nucleus	45.14	45.73
TraesCS6D01G388300.1	Wheat	nucleus	46.0	45.61
Zm00001d021489_P001	Maize	nucleus, plastid	45.57	45.47
TraesCS6B01G449200.1	Wheat	nucleus	45.36	44.59
HORVU2Hr1G096430.13	Barley	mitochondrion	46.65	40.68
AT5G02010.1	Thale cress	nucleus	45.36	38.46
AT4G38430.1	Thale cress	nucleus	44.49	37.59
AT4G13240.1	Thale cress	nucleus	38.23	34.24
AT5G05940.1	Thale cress	cytosol	44.92	34.04
AT1G79860.1	Thale cress	nucleus	37.8	33.98
AT3G24620.1	Thale cress	nucleus	38.23	33.84
AT3G55660.1	Thale cress	cytosol, plastid	40.82	32.64
AT1G52240.1	Thale cress	nucleus	38.01	32.41
AT3G16130.1	Thale cress	nucleus	37.15	31.97
AT5G19560.4	Thale cress	mitochondrion	34.77	31.45
AT1G31650.1	Thale cress	mitochondrion, nucleus	32.83	26.39

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:819197	UniProt:A0A178VPS7	ProteinID:AAC28535.1	ProteinID:AEC10614.1
EMBL:AK229390	ArrayExpress:AT2G45890	EnsemblPlantsGene:AT2G45890	RefSeq:AT2G45890	TAIR:AT2G45890	RefSeq:AT2G45890-TAIR-G
EnsemblPlants:AT2G45890.1	TAIR:AT2G45890.1	Symbol:ATROPGEF4	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009531
GO:GO:0009605	GO:GO:0009607	GO:GO:0009653	GO:GO:0009664	GO:GO:0009817	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0030312	GO:GO:0040007
GO:GO:0048767	GO:GO:0065009	InterPro:IPR005512	RefSeq:NP_182113.2	ProteinID:OAP07235.1	PFAM:PF03759
PO:PO:0000230	PO:PO:0000256	PO:PO:0000262	PO:PO:0000293	PO:PO:0005352	PO:PO:0007611
PO:PO:0009005	PO:PO:0009046	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF9
UniProt:Q0WNP7	InterPro:RopGEF	UniParc:UPI0000196EE2	SEG:seg	:	:

Description

ROPGEF4Rop guanine nucleotide exchange factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNP7]

Coordinates

chr2:+:18883377..18885729

Molecular Weight (calculated)

52038.0 Da

IEP (calculated)

4.663

GRAVY (calculated)

-0.537

Length

463 amino acids

Sequence
(BLAST)

001: MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV SEDAEEPKDD VVNDVHGDGD EEDSDIDSAE DAELEMMRER
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.