CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88130
EES05544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	EER88130	AT5G62880.1	22500990
AT2G45890.1	EES05544	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029850_P001	Maize	nucleus, plastid	93.25	93.25
Os10t0550300-00	Rice	plastid	79.96	81.63
TraesCS1A01G208700.1	Wheat	nucleus	77.3	79.25
TraesCS1D01G211900.1	Wheat	nucleus	77.1	79.04
HORVU1Hr1G053350.4	Barley	nucleus, plastid	76.89	78.66
TraesCS1B01G222700.1	Wheat	plastid	76.48	78.24
EES11256	Sorghum	nucleus	57.67	59.87
GSMUA_Achr5P20570_001	Banana	nucleus	58.69	59.54
KRH15734	Soybean	cytosol	31.08	58.46
PGSC0003DMT400000136	Potato	nucleus	54.19	55.56
Solyc01g094610.2.1	Tomato	nucleus	54.19	55.56
CDY57376	Canola	cytosol, extracellular, nucleus	8.38	54.67
EER99384	Sorghum	nucleus, plastid	51.74	54.64
KRH65102	Soybean	nucleus	53.58	54.47
CDY07216	Canola	cytosol	51.12	52.63
KRH48179	Soybean	nucleus	40.29	52.53
CDY70620	Canola	nucleus	50.31	52.45
CDY51157	Canola	nucleus	48.67	52.31
KRG94270	Soybean	mitochondrion	11.86	52.25
AT4G00460.2	Thale cress	nucleus	50.51	52.22
Bra000971.1-P	Field mustard	nucleus	50.92	52.09
Bra037342.1-P	Field mustard	cytosol	50.72	51.99
VIT_15s0046g02530.t01	Wine grape	plastid	53.37	51.79
KRH00737	Soybean	nucleus, plastid	53.99	51.56
CDX74772	Canola	nucleus, plastid	47.44	51.56
Bra004945.1-P	Field mustard	nucleus, plastid	48.06	51.09
KRH40457	Soybean	cytosol	53.37	50.98
CDY18892	Canola	nucleus	46.83	50.66
AT2G45890.1	Thale cress	nucleus, plastid	47.65	50.32
AT1G01700.4	Thale cress	nucleus	50.51	47.96
EES03886	Sorghum	cytosol	47.65	42.75
EER99291	Sorghum	nucleus, plastid	45.4	39.71
EES18335	Sorghum	cytosol	46.63	38.91
OQU84790	Sorghum	cytosol	34.76	38.64
CDX91908	Canola	cytosol	50.92	38.02
EES19937	Sorghum	mitochondrion	37.83	33.64
KXG33101	Sorghum	mitochondrion	37.83	33.09
OQU87589	Sorghum	nucleus	34.97	33.08
KXG30927	Sorghum	cytosol	32.92	29.81

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:8058761	UniProt:C5WSK6	EnsemblPlants:EER91970	ProteinID:EER91970
ProteinID:EER91970.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3001G305300	UniParc:UPI0001A8252E	RefSeq:XP_002464972.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:58918023..58921635

Molecular Weight (calculated)

53080.8 Da

IEP (calculated)

5.982

GRAVY (calculated)

-0.243

Length

489 amino acids

Sequence
(BLAST)

001: MDRDSSSVSD GSSEAGGERG GGCCSSPSTR SLVDAAGGNL SRTVSDVSTS AFSEQCSSVS VDVDHSGPFE PTAAAVAKLI ARSSPASAAE SLRRLSIKPR
101: ADVLDRRSTD DELELVKERF SKLLLGEDMS GGGKGVCTAV AISNAITNLY ATVFGSCHKL EPLPAGKKAM WTREMDCLLS VCDYIVEFYP STQTLPDGTK
201: VEVMATRPRS DIYINLPALE KLDAMLIDIL DSFQKAEFWY ADAGTRSFGS VTSSSSSRTM SSSFRRSAHR NEDKWWLPVP CVPDAGLTDK ARKDLQKRRD
301: CANQIHKAAV AINSGVLSDM EVPESFMAVL PKSGRASVGD SVYRVMLGAD KFSPEFLLDT LDISSEHDAL AMADRVEAAM YVWRRKASGS HGKLPWSKVK
401: EIAADGDDKN VTLANRAESL LLCIKHRFPG LSQTTLDTSK IQFNKDVGQA ILESYSRVLE SLAFNIVSWI DDVLFVDRSI RKLGDNLKP

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.