Factsheet for HORVU1Hr1G053350.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G076210.5
HORVU7Hr1G038980.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	HORVU6Hr1G076210.5	AT5G62880.1	22500990
AT2G45890.1	HORVU7Hr1G038980.5	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G208700.1	Wheat	nucleus	97.07	97.27
TraesCS1D01G211900.1	Wheat	nucleus	97.07	97.27
TraesCS1B01G222700.1	Wheat	plastid	97.07	97.07
Os10t0550300-00	Rice	plastid	80.33	80.17
EER91970	Sorghum	plastid	78.66	76.89
Zm00001d029850_P001	Maize	nucleus, plastid	77.82	76.07
KRH15734	Soybean	cytosol	31.17	57.31
CDY57376	Canola	cytosol, extracellular, nucleus	8.79	56.0
GSMUA_Achr5P20570_001	Banana	nucleus	55.65	55.19
HORVU6Hr1G092860.2	Barley	nucleus	51.88	54.27
PGSC0003DMT400000136	Potato	nucleus	53.97	54.09
KRH65102	Soybean	nucleus	54.39	54.05
Solyc01g094610.2.1	Tomato	nucleus	53.77	53.88
KRH48179	Soybean	nucleus	41.21	52.53
CDY70620	Canola	nucleus	51.26	52.24
AT4G00460.2	Thale cress	nucleus	51.46	52.01
Bra000971.1-P	Field mustard	nucleus	51.88	51.88
CDY07216	Canola	cytosol	51.46	51.79
CDY51157	Canola	nucleus	49.16	51.65
KRG94270	Soybean	mitochondrion	11.92	51.35
HORVU2Hr1G096430.13	Barley	mitochondrion	56.69	51.04
VIT_15s0046g02530.t01	Wine grape	plastid	53.77	50.99
Bra037342.1-P	Field mustard	cytosol	50.84	50.94
KRH00737	Soybean	nucleus, plastid	52.51	49.02
KRH40457	Soybean	cytosol	52.09	48.63
CDX74772	Canola	nucleus, plastid	45.61	48.44
AT1G01700.4	Thale cress	nucleus	52.09	48.35
Bra004945.1-P	Field mustard	nucleus, plastid	46.23	48.04
CDY18892	Canola	nucleus	45.19	47.79
AT2G45890.1	Thale cress	nucleus, plastid	46.23	47.73
HORVU1Hr1G072910.3	Barley	cytosol	44.98	38.12
CDX91908	Canola	cytosol	51.67	37.71
HORVU5Hr1G085510.1	Barley	nucleus, plastid	44.35	37.46
HORVU3Hr1G073200.1	Barley	nucleus	35.56	35.71
HORVU6Hr1G050860.4	Barley	mitochondrion	37.03	35.19
HORVU3Hr1G085680.2	Barley	plastid	46.23	33.84
HORVU3Hr1G062030.1	Barley	nucleus, plastid	37.87	29.15
HORVU1Hr1G086590.2	Barley	plastid	36.82	26.11
HORVU6Hr1G068660.4	Barley	nucleus	30.75	24.3
HORVU6Hr1G041610.18	Barley	plastid	30.96	19.73

Protein Annotations

EnsemblPlants:HORVU1Hr1G053350.4	EnsemblPlantsGene:HORVU1Hr1G053350	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF
PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	PFAM:PF03759	PFscan:PS51334	SEG:seg	UniParc:UPI000B479232
UniProt:A0A287FM91	MapMan:27.4.3.1	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:394417817..394420439

Molecular Weight (calculated)

51692.8 Da

IEP (calculated)

6.136

GRAVY (calculated)

-0.261

Length

478 amino acids

Sequence
(BLAST)

001: MADSSNSPST SLSDESSEAE AQCCSSSSTA PSLVDAVDFS RTASDVSTFS ERSVDHSGPF GTAAVSKLIG GRGSPAAALS RLSMKPRADV IDRRSTEDEL
101: DLVKERFSKL LLGEDMSGGG KGVCTAVAIS NAITNLYATV FGSCHKLEPL PAGKKTMWRR EMDCLLAVCD YIVEFYPSTQ PLSDGTRVEV MATRPRSDIY
201: INLPALEKLD AMLIEIMDSF QKAEFWYADA GTRSFGSVTS SSSPSSSFRR STTTTTHRNE DKWWVPVPCV PEGGLSAKAR KELRQRRECA NQIHKAAVAI
301: NSGVLSDMEV PESFMALLPR SGKASVGDAV YRAMHSSDKF SPDYLLDCVD VSSEHEALAL ADRVEAAMYV WRRKATASHG AGRSAQWSRV KELAAAADDG
401: GEGGKNVALA GRAESLLLCI KHRFPGLSQT TLDTSKIQFN KDVGQAILES YSRVLESLAF NIVSWTDEVL FADKAARK

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.