CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40457	Soybean	cytosol	94.73	94.73
KRG94270	Soybean	mitochondrion	17.58	81.08
KRH65102	Soybean	nucleus	70.12	74.64
KRH15734	Soybean	cytosol	36.52	71.92
KRH48179	Soybean	nucleus	51.37	70.13
PGSC0003DMT400000136	Potato	nucleus	60.16	64.57
Solyc01g094610.2.1	Tomato	nucleus	59.96	64.36
AT4G00460.2	Thale cress	nucleus	58.59	63.42
Bra000971.1-P	Field mustard	nucleus	58.98	63.18
Bra037342.1-P	Field mustard	cytosol	58.4	62.68
VIT_15s0046g02530.t01	Wine grape	plastid	60.16	61.11
AT1G01700.4	Thale cress	nucleus	58.4	58.06
GSMUA_Achr5P20570_001	Banana	nucleus	52.54	55.81
Os10t0550300-00	Rice	plastid	50.78	54.28
EER91970	Sorghum	plastid	51.56	53.99
Zm00001d002696_P001	Maize	cytosol	48.63	53.9
Zm00001d029850_P001	Maize	nucleus, plastid	51.37	53.78
EES11256	Sorghum	nucleus	49.41	53.72
TraesCS2B01G426300.1	Wheat	cytosol	48.63	53.55
TraesCS1D01G211900.1	Wheat	nucleus	49.61	53.25
TraesCS1A01G208700.1	Wheat	nucleus	49.41	53.04
TraesCS2A01G408100.1	Wheat	cytosol	48.44	52.99
TraesCS2D01G405400.1	Wheat	nucleus	48.44	52.77
TraesCS1B01G222700.1	Wheat	plastid	49.22	52.72
HORVU1Hr1G053350.4	Barley	nucleus, plastid	49.02	52.51
Os04t0559100-00	Rice	cytosol	18.55	52.2
Os07t0481100-01	Rice	cytosol	46.68	51.96
EER99384	Sorghum	nucleus, plastid	46.29	51.19
Zm00001d021489_P001	Maize	nucleus, plastid	46.29	51.08
TraesCS6A01G405000.1	Wheat	nucleus	45.31	50.77
HORVU6Hr1G092860.2	Barley	nucleus	45.12	50.55
TraesCS6D01G388300.1	Wheat	nucleus	45.7	50.11
TraesCS6B01G449200.1	Wheat	nucleus	45.51	49.47
HORVU2Hr1G096430.13	Barley	mitochondrion	48.44	46.7
KRH73109	Soybean	nucleus	46.29	42.55
KRH31060	Soybean	nucleus	47.66	40.8
KRH44350	Soybean	nucleus	36.13	40.75
KRG97804	Soybean	nucleus	46.88	40.47
KRH15022	Soybean	nucleus	43.75	39.93
KRH75747	Soybean	nucleus	44.73	39.15
KRH29101	Soybean	cytosol, plastid	43.16	39.05
KRH65969	Soybean	nucleus	45.7	38.74
KRH24128	Soybean	cytosol	42.77	38.56
KRH00070	Soybean	nucleus	46.09	38.5
KRH39304	Soybean	nucleus	37.3	36.73
KRH47282	Soybean	nucleus	38.09	36.25
KRH09881	Soybean	cytosol	37.5	36.02
KRH23439	Soybean	nucleus	37.5	35.96
KRH48369	Soybean	mitochondrion	37.11	33.81
KRH49210	Soybean	nucleus, plastid	45.9	32.87
KRH07751	Soybean	cytosol, nucleus, plastid	34.77	32.07
KRH07240	Soybean	cytosol, nucleus, plastid	34.77	32.01
KRH76428	Soybean	mitochondrion, nucleus	34.96	31.79
KRH39757	Soybean	mitochondrion, nucleus	34.38	31.26

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	EntrezGene:100806086	MapMan:27.4.3.1	EMBL:ACUP02011469	EnsemblPlantsGene:GLYMA_18G232800
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	InterPro:IPR005512	UniProt:K7MU90	ProteinID:KRH00735.1	ProteinID:KRH00736.1	EnsemblPlants:KRH00737
ProteinID:KRH00737	ProteinID:KRH00737.1	ProteinID:KRH00738.1	ProteinID:KRH00739.1	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	InterPro:RopGEF	UniParc:UPI00023D926A	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:52118131..52127095

Molecular Weight (calculated)

58311.3 Da

IEP (calculated)

6.151

GRAVY (calculated)

-0.479

Length

512 amino acids

Sequence
(BLAST)

001: MDKSSNFDEN SDVGYHPSSP SNTPAFSPMS RDSFAYCPTW TSSESETVDE SSYASEPSPS RWRAKQDVLS KLGMKLREHS KDDKLDGCVD SAELELMKER
101: FAKLLLGEDM SGSGKGVCTA VTISNAITNL YATVFGQSLK LEPLKPEKKA MWKREMKVLL SVCDYIQEFA PTAQYLEDGT IVEMMKSRPR SDIYVNLPAL
201: QKLDTMLIEI LDTFKDTEFW YAENIPGNSS RLRGASFRKN VPRKDDKWWL PVPCVLPGGL SDKSRKHLIE KRDCANQIHK AAMAINSNVL AEIDIPETYI
301: DNLPKLKFYC QVIEDSFKCD PIKQMSWNFS SNFISLLWKP IIAAESCRKR DDIVSIKSGR SSVGDSIYHY MHTADKFSPE QLLDCLKISS EHEALELADR
401: VESSMYTWRR KACLSHSKSS WSKVKDLIED TDCKDKNYTL AERAESLLLC LKQRYPELSQ TSLDTCKIQY NRDVGKAVLE SYSRVLEGLA FNIVAWIEDV
501: LYVDKSMRNR DV

Best Arabidopsis Sequence Match ( AT1G01700.1 )
(BLAST)

001: MENLPNHEEN DDVGYHQSPG PIDPNDHSAS ETPVYSTMST DSFAYHRTCS ETSGGGFSDQ IDETSSFCTE ASPSDWPVLT ESNNSASSNF PTVFDLKHNQ
101: IETDEHLAVQ EISEPELETM KERFSKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLEIE QKTTWKREMN CLLSVCDYIF EFIPKSQNLS
201: NGATVEVMES RPRADIYINL PALRKLDSML MEALDSFQKT EFWYAEEGSL SMKSTRSATG SFRKVIVQRK EEKWWLPIPL VPLQGLSEKA RKQLKSKRES
301: TNQIHKAAMA INSSILGEMD IPDSYMATLP KSGKASTGDA IYRHMTSSGR FSPEKLLDRL KIVSEHEALQ LADRVEASMY TWRRKACLNN SKSSWNMVKD
401: LMSITERSDK NYVLAERAES LLFCLKQRYP ELSQTSLDIC KIHCNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MRGEE

Arabidopsis Description

ATROPGEF2RHO guanyl-nucleotide exchange factor 2 [Source:TAIR;Acc:AT1G01700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.