Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65969 | Soybean | nucleus | 83.76 | 81.13 |
| KRH00070 | Soybean | nucleus | 65.64 | 62.64 |
| GSMUA_Achr9P03750_001 | Banana | cytosol | 48.72 | 61.16 |
| VIT_08s0007g01380.t01 | Wine grape | nucleus | 61.2 | 58.78 |
| AT5G02010.1 | Thale cress | nucleus | 53.68 | 57.51 |
| Solyc09g011480.2.1 | Tomato | nucleus | 55.73 | 55.44 |
| Bra009621.1-P | Field mustard | nucleus | 52.65 | 55.0 |
| CDY10476 | Canola | nucleus | 52.65 | 55.0 |
| CDY40325 | Canola | nucleus | 52.48 | 54.82 |
| Os01t0849100-01 | Rice | cytosol | 50.43 | 54.03 |
| KRH49210 | Soybean | nucleus, plastid | 65.81 | 53.85 |
| EES03886 | Sorghum | cytosol | 49.91 | 53.58 |
| TraesCS3D01G357800.1 | Wheat | cytosol | 48.72 | 52.97 |
| KRH73109 | Soybean | nucleus | 50.43 | 52.96 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 48.55 | 52.69 |
| TraesCS3A01G364400.1 | Wheat | nucleus | 48.72 | 52.68 |
| KRH15734 | Soybean | cytosol | 23.25 | 52.31 |
| KRG97804 | Soybean | nucleus | 52.82 | 52.11 |
| KRH31060 | Soybean | nucleus | 52.82 | 51.67 |
| TraesCS1D01G280000.1 | Wheat | cytosol | 48.89 | 51.16 |
| Zm00001d042861_P001 | Maize | cytosol | 50.09 | 51.13 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 49.06 | 50.71 |
| HORVU1Hr1G072910.3 | Barley | cytosol | 48.55 | 50.35 |
| Os05t0454200-01 | Rice | nucleus | 48.89 | 50.35 |
| KRH15022 | Soybean | nucleus | 48.03 | 50.09 |
| Solyc10g086660.1.1 | Tomato | nucleus | 58.12 | 50.07 |
| Zm00001d010062_P001 | Maize | peroxisome | 49.06 | 49.74 |
| PGSC0003DMT400005554 | Potato | cytosol, plastid | 55.9 | 49.62 |
| PGSC0003DMT400049230 | Potato | nucleus | 58.63 | 49.57 |
| EES18335 | Sorghum | cytosol | 49.4 | 49.32 |
| KRH65102 | Soybean | nucleus | 40.34 | 49.06 |
| TraesCS1A01G280900.2 | Wheat | cytosol | 48.21 | 47.88 |
| KRG94270 | Soybean | mitochondrion | 8.89 | 46.85 |
| KRH48179 | Soybean | nucleus | 29.4 | 45.87 |
| KRH24128 | Soybean | cytosol | 44.1 | 45.42 |
| KRH29101 | Soybean | cytosol, plastid | 43.76 | 45.23 |
| VIT_08s0007g01390.t01 | Wine grape | nucleus | 45.98 | 45.21 |
| KRH00737 | Soybean | nucleus, plastid | 39.15 | 44.73 |
| KRH40457 | Soybean | cytosol | 38.46 | 43.95 |
| KRH44350 | Soybean | nucleus | 34.02 | 43.83 |
| HORVU3Hr1G085680.2 | Barley | plastid | 48.38 | 43.34 |
| KRH39304 | Soybean | nucleus | 34.87 | 39.23 |
| KRH47282 | Soybean | nucleus | 35.04 | 38.1 |
| KRH09881 | Soybean | cytosol | 34.7 | 38.09 |
| KRH23439 | Soybean | nucleus | 34.19 | 37.45 |
| KRH48369 | Soybean | mitochondrion | 35.04 | 36.48 |
| Zm00001d047899_P001 | Maize | cytosol | 16.75 | 35.25 |
| KRH07240 | Soybean | cytosol, nucleus, plastid | 31.97 | 33.63 |
| KRH07751 | Soybean | cytosol, nucleus, plastid | 31.62 | 33.33 |
| KRH76428 | Soybean | mitochondrion, nucleus | 31.62 | 32.86 |
| KRH39757 | Soybean | mitochondrion, nucleus | 31.28 | 32.5 |
| Zm00001d023356_P001 | Maize | cytosol | 19.49 | 32.11 |
| Zm00001d037119_P001 | Maize | plastid | 22.73 | 30.86 |
| Zm00001d049679_P001 | Maize | plastid | 22.56 | 29.86 |
| GSMUA_Achr6P14950_001 | Banana | mitochondrion | 47.69 | 21.01 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | UniProt:A0A0R0LF30 | EMBL:ACUP02000476 | EnsemblPlantsGene:GLYMA_01G105900 | GO:GO:0003674 |
| GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 |
| InterPro:IPR005512 | EnsemblPlants:KRH75747 | ProteinID:KRH75747 | ProteinID:KRH75747.1 | PFAM:PF03759 | InterPro:PRONE_dom |
| PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF14 | InterPro:RopGEF | UniParc:UPI0006EDB368 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:-:35707886..35715045
Molecular Weight (calculated)
65317.6 Da
IEP (calculated)
5.118
GRAVY (calculated)
-0.480
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEALIDYK SEGVERSIEC ENGCSDESFA DLIKEKGGES SSNSEILLSE MTELDDQNFD LNHLIKEKGG EKSSSSEVMT ELDGQSQGSA EDSSSSTSMM
101: WQVQEMPTSN SPSPRGREDA EKKGMCNENF EEKISGLPMS VLELELMKER FAKLLLGEDM SGSGNGVPAA LTVSNAITNL CATLFGQLWR LEPLAPEKKA
201: MWRREMECLL SVSDYIVELK PTWQTFPDGS KLEVMTTRPR SDLYVNLPAL RKLDNMLLEI LDSFVNPEFR YVDQGVLATD ADGSSSFRQA LQRLEEKWWL
301: PVPQVPPCGL REDSRKQLQH KRDSTKQILK AAMAINSITL ADMEIPHTYL ESLPKTARAS LGDVIYRYIT TDNFSLECMP ACLDLSSEHQ AIEIANRVEA
401: SIYIWRKKTN SRPTTGRTTR SSSRSSWEIF KDLIVEGDKM ETLAERAESL LLSLKQRFPA LPQTALDMSK IQCNKDVGKS ILESYSRILE SLSSNIVARI
501: DDVLYVDELT KHSNPISSFP KVGVIAHKSI SVPHSLPGQS IPPHKSSFGT PSFSPAQCVS LKGSKIINHQ QRQPSPKRGQ HSTKF
101: WQVQEMPTSN SPSPRGREDA EKKGMCNENF EEKISGLPMS VLELELMKER FAKLLLGEDM SGSGNGVPAA LTVSNAITNL CATLFGQLWR LEPLAPEKKA
201: MWRREMECLL SVSDYIVELK PTWQTFPDGS KLEVMTTRPR SDLYVNLPAL RKLDNMLLEI LDSFVNPEFR YVDQGVLATD ADGSSSFRQA LQRLEEKWWL
301: PVPQVPPCGL REDSRKQLQH KRDSTKQILK AAMAINSITL ADMEIPHTYL ESLPKTARAS LGDVIYRYIT TDNFSLECMP ACLDLSSEHQ AIEIANRVEA
401: SIYIWRKKTN SRPTTGRTTR SSSRSSWEIF KDLIVEGDKM ETLAERAESL LLSLKQRFPA LPQTALDMSK IQCNKDVGKS ILESYSRILE SLSSNIVARI
501: DDVLYVDELT KHSNPISSFP KVGVIAHKSI SVPHSLPGQS IPPHKSSFGT PSFSPAQCVS LKGSKIINHQ QRQPSPKRGQ HSTKF
001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKDVG KSILESYSRV LESLAYSIGV RIEEVLFMDD ISKDDGDGDD DSCSDKLRLL SKEAASGGSG
501: SLREKLSAPS LFSVSFSGTS TPYRTLSFSA STPSYSPMPL ISPINGGRGG ERAPFLSGRN IRERCGFGPK KALANYLRG
Arabidopsis Description
ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.