Factsheet for PGSC0003DMT400005554

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011480.2.1	Tomato	nucleus	85.13	95.41
PGSC0003DMT400049230	Potato	nucleus	74.66	71.1
GSMUA_Achr9P03750_001	Banana	cytosol	47.65	67.38
VIT_08s0007g01380.t01	Wine grape	nucleus	61.3	66.34
AT5G02010.1	Thale cress	nucleus	51.59	62.27
KRH00070	Soybean	nucleus	56.3	60.52
CDY10476	Canola	nucleus	51.14	60.18
Bra009621.1-P	Field mustard	nucleus	50.83	59.82
CDY40325	Canola	nucleus	50.83	59.82
PGSC0003DMT400067654	Potato	nucleus	47.95	59.4
EES03886	Sorghum	cytosol	47.95	57.98
Os01t0849100-01	Rice	cytosol	47.8	57.69
KRH75747	Soybean	nucleus	49.62	55.9
TraesCS3A01G364400.1	Wheat	nucleus	45.83	55.82
KRH65969	Soybean	nucleus	51.14	55.79
TraesCS3B01G396500.1	Wheat	cytosol	45.37	55.47
TraesCS3D01G357800.1	Wheat	cytosol	45.07	55.2
TraesCS1D01G280000.1	Wheat	cytosol	46.43	54.74
Zm00001d042861_P001	Maize	cytosol	47.34	54.45
HORVU1Hr1G072910.3	Barley	cytosol	46.59	54.43
KRH49210	Soybean	nucleus, plastid	58.88	54.27
TraesCS1B01G289900.1	Wheat	cytosol	46.43	54.06
Os05t0454200-01	Rice	nucleus	45.83	53.17
EES18335	Sorghum	cytosol	46.74	52.56
Zm00001d010062_P001	Maize	peroxisome	44.76	51.13
TraesCS1A01G280900.2	Wheat	cytosol	45.68	51.1
VIT_08s0007g01390.t01	Wine grape	nucleus	45.07	49.92
PGSC0003DMT400000136	Potato	nucleus	35.36	48.85
PGSC0003DMT400047997	Potato	nucleus	42.03	48.01
HORVU3Hr1G085680.2	Barley	plastid	46.89	47.32
PGSC0003DMT400025800	Potato	nucleus	37.63	45.17
PGSC0003DMT400006531	Potato	cytosol	31.11	40.84
PGSC0003DMT400042632	Potato	nucleus	28.22	39.74
PGSC0003DMT400040374	Potato	nucleus	27.01	37.87
PGSC0003DMT400001020	Potato	nucleus	30.8	36.58
PGSC0003DMT400097197	Potato	nucleus	31.11	36.41
Zm00001d047899_P001	Maize	cytosol	15.33	36.33
Zm00001d023356_P001	Maize	cytosol	19.42	36.06
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	28.83	33.75
Zm00001d037119_P001	Maize	plastid	20.64	31.55
Zm00001d049679_P001	Maize	plastid	20.64	30.77
PGSC0003DMT400075550	Potato	extracellular	9.56	30.58
GSMUA_Achr6P14950_001	Banana	mitochondrion	47.19	23.42

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:102596759	MapMan:27.4.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
UniProt:M0ZQ29	PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400002173	PGSC:PGSC0003DMG400002173	EnsemblPlants:PGSC0003DMT400005554	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF14	InterPro:RopGEF	UniParc:UPI000296F869	RefSeq:XP_006367662.1
SEG:seg	:	:	:	:	:

Description

Rop guanine nucleotide exchange factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002173]

Coordinates

chr9:+:1075676..1079306

Molecular Weight (calculated)

74290.3 Da

IEP (calculated)

5.095

GRAVY (calculated)

-0.389

Length

659 amino acids

Sequence
(BLAST)

001: MEKGVPLQFQ PQLKHFIPIN TCTNSKNCTL FSVFKFQVCK SIKNLYQKSK GFGSKRFDFD GVVVENSAFL DDKMEVLTEK SDGAEGKVEF CEENDIKIES
101: FVYEEEGIES SLSSDFLVSE GTVNDEENSS SENSYSPPSI VWHVQKNASS EEVEKPHVDK RKLEKQGSCL SEVEMMKERF SKLLLGEDMS GCGNGVCTAL
201: VISNAITNLC ATLFGQIWRL EPLPTEKRLM WRREMEWLLC VSDYIVELTP SWQTFPDGTK LEVMTSRPRL DLYANLPALR KLDNMLLEIL DSFSKTEFWY
301: VDQGLLAEEA DGSSSFRNPL PRQEEKWWLP VPRVPIDGLS ENAKKQLQHK RDCTNQILKA VMAINSNTLA DMEVPESYVE NLPKNGKASL GDLIHRYITS
401: DQFSPECLLD CLDLSSEHQA LEIGNRVEAS IYVWRRRTQA KSSLLRSNSK SSWEMVKDLM IDVDKRDLLA DRAESLLLCL RQRFPGLPQT TLDMSKIQHN
501: KDVGKSILES YSRVLESLAF NIVARIDDLI YVDNLTQLSD QFVPISKVGI ISHKIIGTPI SVHVSGSQIK APFTTPISSS QHISPAKGDR SQFLDNNKTS
601: QFGFGVKKML TDYWSVDSNG KDISNELKRL DSATASVGSS SECSREIVSP STHDLLKEA

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.