Factsheet for Zm00001d037119_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047899_P001	Maize	cytosol	64.27	99.64
Zm00001d049679_P001	Maize	plastid	96.06	93.67
Zm00001d023356_P001	Maize	cytosol	33.87	41.13
EES03886	Sorghum	cytosol	39.91	31.56
Zm00001d042861_P001	Maize	cytosol	40.84	30.72
GSMUA_Achr9P03750_001	Banana	cytosol	32.71	30.26
Os01t0849100-01	Rice	cytosol	38.05	30.04
TraesCS3A01G364400.1	Wheat	nucleus	37.59	29.94
TraesCS3D01G357800.1	Wheat	cytosol	37.35	29.93
TraesCS3B01G396500.1	Wheat	cytosol	37.12	29.68
Zm00001d006269_P001	Maize	cytosol	24.83	27.86
Solyc08g006550.2.1	Tomato	nucleus	32.95	26.79
PGSC0003DMT400067654	Potato	nucleus	32.95	26.69
Zm00001d010062_P001	Maize	peroxisome	32.95	24.61
KRH31060	Soybean	nucleus	33.87	24.41
VIT_13s0019g02710.t01	Wine grape	nucleus	33.64	24.33
HORVU3Hr1G085680.2	Barley	plastid	36.43	24.04
Zm00001d002696_P001	Maize	cytosol	25.75	24.03
AT5G02010.1	Thale cress	nucleus	30.39	23.99
KRG97804	Soybean	nucleus	32.95	23.95
Bra009621.1-P	Field mustard	nucleus	30.86	23.75
KRH73109	Soybean	nucleus	30.63	23.7
CDY10476	Canola	nucleus	30.63	23.57
VIT_08s0007g01380.t01	Wine grape	nucleus	33.18	23.48
Solyc09g011480.2.1	Tomato	nucleus	31.79	23.3
CDY40325	Canola	nucleus	30.16	23.21
Zm00001d029850_P001	Maize	nucleus, plastid	26.22	23.11
KRH75747	Soybean	nucleus	30.86	22.73
KRH00070	Soybean	nucleus	32.25	22.68
KRH65969	Soybean	nucleus	31.55	22.52
CDY40246	Canola	cytosol, plastid	29.0	22.44
CDY41197	Canola	cytosol, plastid	28.77	22.38
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	14.85	22.3
Bra007183.1-P	Field mustard	cytosol, plastid	29.0	21.89
Zm00001d021489_P001	Maize	nucleus, plastid	23.2	21.55
Bra009152.1-P	Field mustard	cytosol, plastid	29.7	21.51
VIT_08s0007g01390.t01	Wine grape	nucleus	29.47	21.34
Zm00001d021464_P002	Maize	nucleus, plastid	28.07	20.97
AT5G05940.1	Thale cress	cytosol	29.7	20.95
KRH15022	Soybean	nucleus	26.91	20.68
PGSC0003DMT400005554	Potato	cytosol, plastid	31.55	20.64
AT3G55660.1	Thale cress	cytosol, plastid	27.61	20.55
CDX70109	Canola	cytosol	30.16	20.54
CDX98888	Canola	cytosol	30.16	20.38
Solyc10g086660.1.1	Tomato	nucleus	31.79	20.18
PGSC0003DMT400049230	Potato	nucleus	32.25	20.09
Zm00001d038989_P002	Maize	nucleus, plastid	23.43	19.8
Zm00001d053307_P002	Maize	cytosol, plastid	22.04	19.67
KRH49210	Soybean	nucleus, plastid	32.25	19.44
Zm00001d009549_P002	Maize	mitochondrion	24.36	19.02
Zm00001d016001_P002	Maize	mitochondrion	22.51	18.16
Zm00001d051553_P004	Maize	cytosol	22.27	17.78
Zm00001d017755_P002	Maize	cytosol	22.27	17.74
Zm00001d043383_P001	Maize	nucleus	21.35	17.59
Zm00001d043889_P001	Maize	mitochondrion	22.97	16.36
GSMUA_Achr6P14950_001	Banana	mitochondrion	31.79	10.32

Protein Annotations

KEGG:00860+1.14.14.18	Gene3D:1.20.58.2010	Gene3D:1.20.910.10	MapMan:27.4.3.1	MapMan:7.12.5.2	UniProt:A0A1D6LUP1
ProteinID:AQK83043.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004392	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0006788	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0055114	GO:GO:0065009	InterPro:Haem_Oase-like	InterPro:Haem_Oase-like_multi-hlx	InterPro:IPR005512
InterPro:IPR016084	PFAM:PF01126	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF27	InterPro:RopGEF	SUPFAM:SSF48613	UniParc:UPI0008DB352A	EnsemblPlantsGene:Zm00001d037119	EnsemblPlants:Zm00001d037119_P001
EnsemblPlants:Zm00001d037119_T001	SEG:seg	:	:	:	:

Description

Rop guanine nucleotide exchange factor 7

Coordinates

chr6:-:112983456..112988589

Molecular Weight (calculated)

48876.5 Da

IEP (calculated)

5.950

GRAVY (calculated)

-0.559

Length

431 amino acids

Sequence
(BLAST)

001: MTTGDPLLLS SSGSADSPSK HQAPARPSVG SLGCLCATDS FSSSLYKDCE TSSVTVMDER EAQPRHLHEL SDVSRVAERF QSADSQFFHR LSVECSQKER
101: QRKVSWGGAM ERQHSPSSLE IGMEILESFR DPEFWYVEQG IAAPDCDGSA SFRMAFHRRD EKWWLPVPRV PPGGLHNKTR KQLQHKRDCA NQILKAAMAI
201: NSNTLAEMEV PEPYLDSLPK NGRSTLGDII YRYITSDQFS PECLLDCLDL STEYQALEVA NRVEASMFPG LTQTSLDMSK IQYNKVFLSL IWFSQYSIHN
301: QITDAEFRNT RLERSEALKN DLEWFRQQGH TIPKPSAPGT TYTSLLEDLS EEDPQAFICH FYNVYFAHTA GGRMIGKKGF REDSKDLEFY KWEGNLSQLL
401: QNVRNKLNQV ASVGARAMPR NINCEPPMDF I

Best Arabidopsis Sequence Match ( AT3G55660.2 )
(BLAST)

001: MEDNSCIGFE GSKRFGETSK RIIGLIDSVT ESTTDSSLSS SSSGVGSSSG RSSVAERSVS SPPTKSQILG WPLGQGSWRK SSGKMKKKTP TKIDDFGFKR
101: VGTETSEIEL LKERMAKLLL GEDMSGSGEG VCPALAISNA ITNLYAAILG QQWRLEPIPS EKKLMWRREI EVLLSVSDHI VELVPSFQNF PNGNKIEVMN
201: CRPRSDLFTC LPALRKLDNM LIEILDSFGE TEFWYVDQGI VAAESARSNS FREDGDKWWL PLPRVPSDGL TEQTRKKLDH TREFTNQILK ACMSINSIAL
301: AEMEVPQSYL EALPKNGRSC LGDFLYRNIT SDNFSADHLL ESIDLSSELA VVEMANRVEA SMYVWRRRAH SRHLISLYRS TSTRWGMIVK EMMMHQTDGD
401: KREIFAERAE SLLIRLKQRF PGLRQTALDT SKIQYNKV

Arabidopsis Description

ROPGEF6Rop guanine nucleotide exchange factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.