Factsheet for PGSC0003DMT400049230

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086660.1.1	Tomato	nucleus	94.8	96.61
PGSC0003DMT400005554	Potato	cytosol, plastid	71.1	74.66
GSMUA_Achr9P03750_001	Banana	cytosol	49.13	72.96
VIT_08s0007g01380.t01	Wine grape	nucleus	60.98	69.29
AT5G02010.1	Thale cress	nucleus	50.87	64.47
CDY10476	Canola	nucleus	51.01	63.04
CDY40325	Canola	nucleus	50.87	62.86
PGSC0003DMT400067654	Potato	nucleus	48.27	62.78
Bra009621.1-P	Field mustard	nucleus	50.58	62.5
KRH00070	Soybean	nucleus	54.91	61.99
EES03886	Sorghum	cytosol	48.55	61.65
Os01t0849100-01	Rice	cytosol	47.69	60.44
TraesCS3A01G364400.1	Wheat	nucleus	46.39	59.33
TraesCS3D01G357800.1	Wheat	cytosol	46.1	59.29
TraesCS3B01G396500.1	Wheat	cytosol	46.1	59.18
KRH75747	Soybean	nucleus	49.57	58.63
KRH65969	Soybean	nucleus	51.16	58.61
TraesCS1D01G280000.1	Wheat	cytosol	46.82	57.96
Zm00001d042861_P001	Maize	cytosol	47.69	57.59
HORVU1Hr1G072910.3	Barley	cytosol	46.82	57.45
TraesCS1B01G289900.1	Wheat	cytosol	46.97	57.42
Os05t0454200-01	Rice	nucleus	46.82	57.04
KRH49210	Soybean	nucleus, plastid	57.95	56.08
EES18335	Sorghum	cytosol	47.11	55.63
TraesCS1A01G280900.2	Wheat	cytosol	46.1	54.16
Zm00001d010062_P001	Maize	peroxisome	44.94	53.9
VIT_08s0007g01390.t01	Wine grape	nucleus	44.08	51.26
HORVU3Hr1G085680.2	Barley	plastid	48.12	51.0
PGSC0003DMT400000136	Potato	nucleus	34.1	49.48
PGSC0003DMT400047997	Potato	nucleus	40.75	48.87
PGSC0003DMT400025800	Potato	nucleus	36.13	45.54
PGSC0003DMT400042632	Potato	nucleus	27.89	41.24
PGSC0003DMT400006531	Potato	cytosol	29.48	40.64
PGSC0003DMT400040374	Potato	nucleus	27.02	39.79
Zm00001d047899_P001	Maize	cytosol	15.17	37.77
PGSC0003DMT400001020	Potato	nucleus	29.48	36.76
PGSC0003DMT400097197	Potato	nucleus	29.34	36.06
Zm00001d023356_P001	Maize	cytosol	18.35	35.77
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	28.03	34.46
PGSC0003DMT400075550	Potato	extracellular	9.68	32.52
Zm00001d037119_P001	Maize	plastid	20.09	32.25
Zm00001d049679_P001	Maize	plastid	19.94	31.22
GSMUA_Achr6P14950_001	Banana	mitochondrion	50.29	26.2

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:102594227	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	UniProt:M1BNG3
PFAM:PF03759	EnsemblPlantsGene:PGSC0003DMG400019139	PGSC:PGSC0003DMG400019139	EnsemblPlants:PGSC0003DMT400049230	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF14	InterPro:RopGEF	UniParc:UPI000295F2C1	RefSeq:XP_006349487.1	SEG:seg

Description

Rop guanine nucleotide exchange factor [Source:PGSC_GENE;Acc:PGSC0003DMG400019139]

Coordinates

chr10:+:50733090..50736706

Molecular Weight (calculated)

77470.5 Da

IEP (calculated)

5.697

GRAVY (calculated)

-0.506

Length

692 amino acids

Sequence
(BLAST)

001: MDRLESHQDK RRDFSLEFQP QLKHFIQLDP CVSSKKENHF SVLKFKVSKS IKNLYQKAKV SKGFGSKRFD FDGIVMTNSV YCGSSPGFLD DKMEVLSDKS
101: DGAAGVMEGY GENAGKIESL DEKIGIESSS SSGFLVSEEN VNEENSGSED SCSPSSIAWH IQDDEVQHCA NSDVSEEVEK PFVDKRKLEK QGSCLSEIEM
201: MKERFSKLLL GEDMSGCGNG VCTALAISNA ITNLCATLFG QIWRLEPLAP EKKLMWRREM EWLLCVSDHI VELIPSWQTF PDGSKLEVMT SRPRSDLYVN
301: LPALRKLDNM LLEILDSFQS TEFWYVDQGI LAPESDGSSS FRNPLPRQEE KWWLPVPRVP PGGLSENARR QLQHKRDCTN QILKAAMAIN SNSLAEMEVP
401: ESYFEGLPKN GKASLGDLIH RYITSDQFSP ECLLDCLDLS SEHQAFEIAN RVESSIYVWR RRVHSKPFGS THRSNSKSSW EMVKDLMVDG DKRELLADRA
501: ESLLLCLKQR FPGLPQTTLD MSKIQYNKDV GKSILESYSR VLESLAFNII ARVDDLLYAD DLNKHSDQFV PISKVGIIAH KSMGTPLSVP VNGTPYKTAF
601: TTPSFSPSQH ISPTKGERSK MFEGSKLSTR GFGVKKVLTD YLSIDSKGKD DFKRSDSCSS TSQDVSATAS TRSSECSREV GSPLTHDSDA KE

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.