Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45890.1 | EER88130 | AT5G62880.1 | 22500990 |
| AT2G45890.1 | EES05544 | AT5G62880.1 | 22500990 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002696_P001 | Maize | cytosol | 92.99 | 94.81 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 80.68 | 81.72 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 81.1 | 81.62 |
| TraesCS2D01G405400.1 | Wheat | nucleus | 81.1 | 81.28 |
| Os04t0559100-00 | Rice | cytosol | 30.15 | 78.02 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 79.83 | 70.81 |
| EER91970 | Sorghum | plastid | 59.87 | 57.67 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 58.39 | 57.05 |
| Solyc01g094610.2.1 | Tomato | nucleus | 54.78 | 54.09 |
| PGSC0003DMT400000136 | Potato | nucleus | 54.78 | 54.09 |
| EER99384 | Sorghum | nucleus, plastid | 52.87 | 53.78 |
| KRH15734 | Soybean | cytosol | 29.51 | 53.46 |
| CDY70620 | Canola | nucleus | 53.08 | 53.3 |
| AT4G00460.2 | Thale cress | nucleus | 53.29 | 53.07 |
| Bra000971.1-P | Field mustard | nucleus | 53.5 | 52.72 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 56.26 | 52.58 |
| KRH65102 | Soybean | nucleus | 53.5 | 52.39 |
| CDY51157 | Canola | nucleus | 50.53 | 52.31 |
| CDY07216 | Canola | cytosol | 52.65 | 52.21 |
| Bra037342.1-P | Field mustard | cytosol | 52.44 | 51.78 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 8.07 | 50.67 |
| KRH48179 | Soybean | nucleus | 39.92 | 50.13 |
| CDX74772 | Canola | nucleus, plastid | 47.77 | 50.0 |
| KRH00737 | Soybean | nucleus, plastid | 53.72 | 49.41 |
| CDY18892 | Canola | nucleus | 47.35 | 49.34 |
| KRH40457 | Soybean | cytosol | 53.29 | 49.02 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 47.77 | 48.91 |
| AT1G01700.4 | Thale cress | nucleus | 53.29 | 48.74 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 47.56 | 48.38 |
| KRG94270 | Soybean | mitochondrion | 10.4 | 44.14 |
| EES03886 | Sorghum | cytosol | 50.11 | 43.3 |
| EER99291 | Sorghum | nucleus, plastid | 47.98 | 40.43 |
| EES18335 | Sorghum | cytosol | 48.62 | 39.08 |
| CDX91908 | Canola | cytosol | 53.72 | 38.63 |
| OQU84790 | Sorghum | cytosol | 35.67 | 38.18 |
| KXG33101 | Sorghum | mitochondrion | 39.7 | 33.45 |
| OQU87589 | Sorghum | nucleus | 36.52 | 33.27 |
| EES19937 | Sorghum | mitochondrion | 36.94 | 31.64 |
| KXG30927 | Sorghum | cytosol | 33.55 | 29.26 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:8064641 | UniProt:C5YDM8 | EnsemblPlants:EES11256 | ProteinID:EES11256 |
| ProteinID:EES11256.1 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 | PFAM:PF03759 | InterPro:PRONE_dom | PFscan:PS51334 |
| PANTHER:PTHR33101 | PANTHER:PTHR33101:SF7 | InterPro:RopGEF | EnsemblPlantsGene:SORBI_3006G176400 | UniParc:UPI0001A86CE9 | RefSeq:XP_002446928.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:53167615..53170360
Molecular Weight (calculated)
52045.7 Da
IEP (calculated)
6.142
GRAVY (calculated)
-0.476
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: METPSSTCDE GSELDARSQS DYADFDDLER PPRGRHRREP SSDVSSECSG EPGSPYGSSP YPRWPVCTLA TRAPPPAAAL LKRLSTTRRG GGGGGGGGGG
101: ARDGKAGDGE LQLIKERFSK LLLGEDMSGS GKGVSTSVAI SNAITNLYAT VFGSCHRLEP LPPEKKSMWR REMDCLLSVC DYIVEFFPSK EMLPDGTTRE
201: VMATRPRSDI YVNLPALEKL DDMLLEILES FQKTEFWYVN NKGQKDDSVA TPCRPVSHRG EEKWWLPVPC VTKPGLTETA RRDLQQKRDC ASQIHKAAMA
301: INNAVLAEIR IPDLYKQALP KCGRASVGDL IYRHMSFPGK FSPEYLLDCL EISSEHEALE AADRVEAAMH VWRRKASQSH SRSPWSAVKD LMESDKNVML
401: ASRAEDVLLC LKQRFPGLSQ TTLDASKIQY NKDVGQAILE SYSRVLESLA YNIVTCIDDV LFADEAARKI A
101: ARDGKAGDGE LQLIKERFSK LLLGEDMSGS GKGVSTSVAI SNAITNLYAT VFGSCHRLEP LPPEKKSMWR REMDCLLSVC DYIVEFFPSK EMLPDGTTRE
201: VMATRPRSDI YVNLPALEKL DDMLLEILES FQKTEFWYVN NKGQKDDSVA TPCRPVSHRG EEKWWLPVPC VTKPGLTETA RRDLQQKRDC ASQIHKAAMA
301: INNAVLAEIR IPDLYKQALP KCGRASVGDL IYRHMSFPGK FSPEYLLDCL EISSEHEALE AADRVEAAMH VWRRKASQSH SRSPWSAVKD LMESDKNVML
401: ASRAEDVLLC LKQRFPGLSQ TTLDASKIQY NKDVGQAILE SYSRVLESLA YNIVTCIDDV LFADEAARKI A
001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
Arabidopsis Description
ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.