CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88227
EER89207
EER97871
EES00507
EES04224
EES04804
EES06648
EES11990
EES12747
EES15089
KXG27287
KXG30263
KXG33416
OQU78843
OQU83188
OQU85473

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	KXG27287	AT1G22920.1	21798944
AT1G52240.1	OQU78843	AT1G34430.1	21798944
AT1G52240.1	EES04224	AT1G34570.1	21798944
AT1G52240.1	EES04804	AT2G42790.1	21798944
AT1G52240.1	EER97871	AT3G06430.1	21798944
AT1G52240.1	EES06648	AT3G16120.1	21798944
AT1G52240.1	KXG33416	AT3G16120.1	21798944
AT1G52240.1	EES12747	AT3G17668.1	21798944
AT1G52240.1	EES00507	AT4G15930.1	21798944
AT1G52240.1	OQU83188	AT4G15930.1	21798944
AT1G52240.1	EER89207	AT4G32960.1	21798944
AT1G52240.1	EES11990	AT5G22310.1	21798944
AT1G52240.1	KXG30263	AT5G22310.1	21798944
AT1G52240.1	EER88227	AT5G57660.1	21798944
AT1G52240.1	OQU85473	AT5G57660.1	21798944
AT1G52240.1	EES15089	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043889_P001	Maize	mitochondrion	86.76	80.17
Os01t0675000-01	Rice	mitochondrion	71.56	72.2
TraesCS3D01G270200.1	Wheat	plastid	64.04	69.11
TraesCS3B01G304200.1	Wheat	plastid	63.33	68.6
HORVU3Hr1G062030.1	Barley	nucleus, plastid	66.73	60.06
OQU84790	Sorghum	cytosol	45.08	57.27
TraesCS3A01G270400.1	Wheat	plastid	62.97	55.96
EES19937	Sorghum	mitochondrion	52.06	52.91
OQU87589	Sorghum	nucleus	48.3	52.22
CDY45633	Canola	nucleus	47.05	50.29
Bra018956.1-P	Field mustard	nucleus	47.59	49.63
Bra021162.1-P	Field mustard	nucleus	38.46	49.54
Bra030396.1-P	Field mustard	nucleus	47.41	49.35
AT1G52240.1	Thale cress	nucleus	47.76	49.17
CDX87879	Canola	nucleus	47.23	47.4
Bra027189.1-P	Field mustard	nucleus	42.93	45.28
CDX97723	Canola	nucleus	42.75	44.92
CDY52982	Canola	nucleus	47.76	44.43
CDY67259	Canola	nucleus	47.76	44.43
CDY30136	Canola	nucleus	43.29	44.0
AT3G16130.1	Thale cress	nucleus	41.5	43.12
CDY28381	Canola	nucleus	42.75	39.9
EES11256	Sorghum	nucleus	33.45	39.7
CDY20181	Canola	nucleus	42.58	39.21
EER99384	Sorghum	nucleus, plastid	31.84	38.44
EES03886	Sorghum	cytosol	37.03	37.98
EER91970	Sorghum	plastid	33.09	37.83
EER99291	Sorghum	nucleus, plastid	37.21	37.21
EES18335	Sorghum	cytosol	36.14	34.47
KXG30927	Sorghum	cytosol	30.77	31.85
Bra021161.1-P	Field mustard	nucleus	2.68	11.28

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	UniProt:A0A1B6Q5A8	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
EnsemblPlants:KXG33101	ProteinID:KXG33101	ProteinID:KXG33101.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3003G254200	UniParc:UPI00081ABB3C	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:59270205..59273022

Molecular Weight (calculated)

61687.4 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.509

Length

559 amino acids

Sequence
(BLAST)

001: MVGGFLRRGH SLDRFLSRRR RRRAVSSSPS FSFSSSSSSS SSSSSSSSPS SPRGSSVRSS GTMADDDDDA PPPPPLLQKR VLSRSHGSRA ATPGRSGQDL
101: PPVPSRTVRD SGPPSELDMM KEKFAKLLLG EDMSGTGKGV SSALALSNAI TNLAASVFGE QRRLEPMSAE RRARWNREID WLLSVADHIV EFAPSQQVSE
201: DGTNFEVMGT QQRGDLLVNI PALRKLDAML LEYLDSFGEA QEFWYVAKDA DGGEDDDDTC TCDKWWIPTV RVPAEGLSEA SRKWLQHQKD LVGQVLKAAM
301: AINADVLGEM EIPEEYMESL PKNGRSILGD SIYKIITDDI FDPNELLQSV DLSTEHKIVD LKDRIEASVV IWHRKICHKL SWAPAGVSLE KREEFEERAQ
401: TALLILKHRF PGIPQSSLDI SKIQYNTDVG YALLESYSRT LESLAFAVLS RIEDVLHADA VACDPNKRTK SRRRPSLEFP VPDAAAAAAE AEAEAETAAA
501: HHSSCVHWQE EDGEKHPGAA PDGNNGRKLR KIHRVVTKKF LHTQQIDSVT SGFKSFTHR

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.