Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97723 | Canola | nucleus | 92.36 | 95.49 |
| AT3G16130.1 | Thale cress | nucleus | 75.27 | 76.95 |
| CDY28381 | Canola | nucleus | 79.45 | 72.95 |
| CDY20181 | Canola | nucleus | 78.55 | 71.17 |
| CDY45633 | Canola | nucleus | 60.0 | 63.1 |
| CDX87879 | Canola | nucleus | 60.36 | 59.6 |
| CDY67259 | Canola | nucleus | 62.36 | 57.07 |
| CDY52982 | Canola | nucleus | 62.0 | 56.74 |
| CDX67930 | Canola | nucleus | 50.18 | 56.67 |
| Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 27.45 | 52.61 |
| TraesCS3D01G296400.1 | Wheat | cytosol | 43.09 | 51.3 |
| CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.64 | 50.84 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 42.55 | 50.32 |
| CDY46477 | Canola | nucleus | 47.45 | 50.1 |
| HORVU3Hr1G073200.1 | Barley | nucleus | 43.09 | 49.79 |
| CDX77402 | Canola | nucleus | 47.09 | 49.71 |
| CDY03296 | Canola | nucleus | 29.82 | 49.55 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.82 | 48.94 |
| CDY03297 | Canola | mitochondrion | 46.36 | 48.76 |
| CDY39783 | Canola | mitochondrion | 46.36 | 48.57 |
| Zm00001d043383_P001 | Maize | nucleus | 45.45 | 47.8 |
| OQU87589 | Sorghum | nucleus | 44.91 | 47.78 |
| Os01t0760300-01 | Rice | plasma membrane | 44.55 | 47.02 |
| CDY44926 | Canola | nucleus | 42.0 | 46.76 |
| TraesCS3B01G304200.1 | Wheat | plastid | 43.82 | 46.71 |
| CDY42277 | Canola | nucleus | 41.64 | 46.36 |
| TraesCS3D01G270200.1 | Wheat | plastid | 43.64 | 46.33 |
| Zm00001d038989_P002 | Maize | nucleus, plastid | 42.55 | 45.88 |
| CDY58963 | Canola | cytosol | 30.91 | 45.7 |
| CDX88884 | Canola | cytosol, plastid | 40.36 | 45.49 |
| CDX92519 | Canola | plastid | 40.73 | 45.07 |
| Os05t0560100-01 | Rice | mitochondrion | 46.55 | 44.99 |
| TraesCS1A01G392100.1 | Wheat | plastid | 45.64 | 44.74 |
| EES19937 | Sorghum | mitochondrion | 44.73 | 44.73 |
| TraesCS1D01G400200.2 | Wheat | plastid | 45.64 | 44.42 |
| Os01t0675000-01 | Rice | mitochondrion | 44.73 | 44.4 |
| CDX70882 | Canola | cytosol | 40.36 | 43.96 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 45.09 | 43.89 |
| KXG33101 | Sorghum | mitochondrion | 44.0 | 43.29 |
| Zm00001d009549_P002 | Maize | mitochondrion | 43.27 | 43.12 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 5.64 | 41.33 |
| Zm00001d043889_P001 | Maize | mitochondrion | 43.27 | 39.34 |
| TraesCS3A01G270400.1 | Wheat | plastid | 44.55 | 38.95 |
| HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 43.64 | 38.65 |
| CDY69871 | Canola | cytosol | 7.82 | 38.39 |
| CDX74772 | Canola | nucleus, plastid | 30.91 | 37.78 |
| CDY18892 | Canola | nucleus | 30.91 | 37.61 |
| CDX93028 | Canola | nucleus | 32.18 | 37.34 |
| CDY70620 | Canola | nucleus | 31.82 | 37.31 |
| CDY51157 | Canola | nucleus | 30.55 | 36.92 |
| CDY07216 | Canola | cytosol | 31.64 | 36.63 |
| HORVU1Hr1G086590.2 | Barley | plastid | 44.73 | 36.5 |
| CDY10476 | Canola | nucleus | 36.91 | 36.25 |
| CDY40325 | Canola | nucleus | 36.91 | 36.25 |
| CDX77457 | Canola | cytosol | 36.0 | 36.2 |
| CDX85176 | Canola | cytosol | 35.64 | 35.83 |
| CDY40246 | Canola | cytosol, plastid | 33.64 | 33.21 |
| CDY41197 | Canola | cytosol, plastid | 33.45 | 33.21 |
| CDY31706 | Canola | cytosol | 29.09 | 31.81 |
| CDX84189 | Canola | cytosol | 28.36 | 31.77 |
| CDX70109 | Canola | cytosol | 35.45 | 30.81 |
| CDY62299 | Canola | cytosol, nucleus, plastid | 30.91 | 30.36 |
| CDY12411 | Canola | cytosol | 7.09 | 30.23 |
| CDX98888 | Canola | cytosol | 34.73 | 29.94 |
| CDY12303 | Canola | nucleus | 30.55 | 29.84 |
| CDX91908 | Canola | cytosol | 31.64 | 26.56 |
Protein Annotations
| Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | GO:A0A078GXA0 | UniProt:A0A078GXA0 | EnsemblPlants:CDY30136 |
| ProteinID:CDY30136 | ProteinID:CDY30136.1 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00044711001 | InterPro:IPR005512 | PFAM:PF03759 |
| InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 | InterPro:RopGEF | UniParc:UPI0004EE6CFA |
Description
BnaC05g37260DBnaC05g37260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXA0]
Coordinates
chrLK032249:+:290321..292604
Molecular Weight (calculated)
62661.7 Da
IEP (calculated)
5.225
GRAVY (calculated)
-0.581
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMVKAVERE DKGSYKFGLY DFENMKEKNS SSRNVKRWNS SSALRSEDPD IDDDTVFKTT AVSSFLPMLP IRPPQTCEAT GEELQEEAGK KTSVSMFQND
101: FLEREQMKER FSKLLLGEDM SGGGKGVSSA LALSNAVTNL SASAFGEQRR LEPMSEDRKE RWRREIGWLL SVTDHIVEFS PTQQTNKDGS SIEVMTTRQR
201: TDLVSNIPAL KKLDVMLTDC LDKFKDQDEF YYITTDSPEH LNSNSTRNAD KWWLPTVKVP PNGLSETSKR FLLSQKECVS QVLKSALAIN AEVLSQMEIP
301: ESYIDSLPKN GKASLGDMIY RMITLDMFDV EKFLLEMDLS SEHKILDLQD KIEASVVIWK RKIVQKDNNK SSSPFSTNLS MEKRQLLEER AETILLLIKL
401: RFPGISQSTL DISKIQFNRD IGLAIMESYS RVLESLAHTV LSRIEDVLVA DQLTQDPESL LCKRYIVKET ESPKKEEERN FCLLKERPIK QKATISLSEV
501: MQWNMEDKND APLKDSGKKV STMIMANNKK STSYLESLGT TRSPREGQYS
101: FLEREQMKER FSKLLLGEDM SGGGKGVSSA LALSNAVTNL SASAFGEQRR LEPMSEDRKE RWRREIGWLL SVTDHIVEFS PTQQTNKDGS SIEVMTTRQR
201: TDLVSNIPAL KKLDVMLTDC LDKFKDQDEF YYITTDSPEH LNSNSTRNAD KWWLPTVKVP PNGLSETSKR FLLSQKECVS QVLKSALAIN AEVLSQMEIP
301: ESYIDSLPKN GKASLGDMIY RMITLDMFDV EKFLLEMDLS SEHKILDLQD KIEASVVIWK RKIVQKDNNK SSSPFSTNLS MEKRQLLEER AETILLLIKL
401: RFPGISQSTL DISKIQFNRD IGLAIMESYS RVLESLAHTV LSRIEDVLVA DQLTQDPESL LCKRYIVKET ESPKKEEERN FCLLKERPIK QKATISLSEV
501: MQWNMEDKND APLKDSGKKV STMIMANNKK STSYLESLGT TRSPREGQYS
001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSE LEQMKDKFAK
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
Arabidopsis Description
ATROPGEF13RHO guanyl-nucleotide exchange factor 13 [Source:TAIR;Acc:AT3G16130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.