CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44926	Canola	nucleus	98.18	98.18
CDY58963	Canola	cytosol	64.98	86.29
CDX92519	Canola	plastid	86.44	85.92
AT5G19560.4	Thale cress	mitochondrion	84.41	81.45
CDX88884	Canola	cytosol, plastid	74.49	75.41
CDX70882	Canola	cytosol	75.1	73.47
GSMUA_Achr2P09130_001	Banana	cytosol	47.98	60.61
GSMUA_Achr5P06900_001	Banana	cytosol	51.42	60.33
GSMUA_Achr6P14020_001	Banana	cytosol	52.43	60.09
TraesCS6A01G196000.1	Wheat	cytosol	51.82	58.72
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.81	58.24
OQU84790	Sorghum	cytosol	51.62	57.95
CDY03296	Canola	nucleus	37.45	55.89
Zm00001d053307_P002	Maize	cytosol, plastid	52.83	54.04
TraesCSU01G211800.1	Wheat	cytosol	35.43	53.68
CDY03297	Canola	mitochondrion	56.07	52.96
GSMUA_Achr3P03410_001	Banana	nucleus	54.05	52.77
CDY39783	Canola	mitochondrion	56.07	52.76
Os02t0272300-01	Rice	plasma membrane	54.45	52.44
CDX77402	Canola	nucleus	55.26	52.4
CDY46477	Canola	nucleus	55.06	52.21
TraesCSU01G211700.1	Wheat	cytosol	35.83	52.06
TraesCSU01G217800.1	Wheat	cytosol	35.83	52.06
HORVU6Hr1G050860.4	Barley	mitochondrion	52.83	51.89
TraesCS6D01G183300.1	Wheat	mitochondrion	53.44	51.87
CDX67930	Canola	nucleus	51.01	51.75
GSMUA_Achr3P15410_001	Banana	nucleus	51.21	51.01
VIT_11s0016g03740.t01	Wine grape	nucleus	55.26	49.19
Zm00001d016001_P002	Maize	mitochondrion	52.83	48.88
CDY45633	Canola	nucleus	50.2	47.42
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	50.81	46.74
CDY69871	Canola	cytosol	10.12	44.64
CDX87879	Canola	nucleus	50.0	44.34
CDX97723	Canola	nucleus	46.15	42.86
CDY67259	Canola	nucleus	50.81	41.76
CDY52982	Canola	nucleus	50.81	41.76
CDY30136	Canola	nucleus	46.36	41.64
CDX93028	Canola	nucleus	37.25	38.82
CDY28381	Canola	nucleus	46.76	38.56
CDY20181	Canola	nucleus	46.56	37.89
CDY57376	Canola	cytosol, extracellular, nucleus	5.67	37.33
CDY18892	Canola	nucleus	34.01	37.17
CDX74772	Canola	nucleus, plastid	33.81	37.11
CDY70620	Canola	nucleus	33.6	35.39
CDY51157	Canola	nucleus	32.59	35.38
CDY07216	Canola	cytosol	33.6	34.95
CDY12411	Canola	cytosol	9.11	34.88
CDX77457	Canola	cytosol	38.06	34.37
CDX85176	Canola	cytosol	37.65	34.0
CDY41197	Canola	cytosol, plastid	37.85	33.75
CDY40246	Canola	cytosol, plastid	37.65	33.39
CDY31706	Canola	cytosol	33.6	33.0
CDX84189	Canola	cytosol	32.39	32.59
CDY10476	Canola	nucleus	36.64	32.32
CDY40325	Canola	nucleus	36.64	32.32
CDY62299	Canola	cytosol, nucleus, plastid	33.2	29.29
CDX70109	Canola	cytosol	37.45	29.23
CDY12303	Canola	nucleus	33.2	29.13
CDX98888	Canola	cytosol	37.04	28.68
CDX91908	Canola	cytosol	33.6	25.34

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	GO:A0A078HWT8	UniProt:A0A078HWT8	EnsemblPlants:CDY42277
ProteinID:CDY42277	ProteinID:CDY42277.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	EnsemblPlantsGene:GSBRNA2T00074514001	InterPro:IPR005512	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI0004EED0A1
SEG:seg	:	:	:	:	:

Description

BnaC02g08830DBnaC02g08830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWT8]

Coordinates

chrLK032520:+:63854..66673

Molecular Weight (calculated)

56425.0 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.635

Length

494 amino acids

Sequence
(BLAST)

001: MLDGLNSGNS SFSSRGDGRQ TPDHELAVHA TPSAQGTSRG NQNRISDMEV MKERFARLLL GEDMSGGNEG VSSALALSNA ITNLADSMFG EQMKLQPMYP
101: ETKEIWRKEL DWLLSVVDHI VQFVPSKQMA KNGAITEIMV TKQRDDLLMN IPALRKLDSV LLESLDNFKD QKDFWYVPRD VEDTENNGDL RRDENWWLPV
201: VKVPSDGLSE ESRKLLYSQK DSVSQVLKAA TAINAVVLSE MHIPDNYIDS LPKNGKTSLG DFLYKNITDE YFDPDYFISF LELSTEHKVL DLKNRIEASM
301: VIWKRKMNQK EKDGKSQWGS SVSLEKRELF EVRAETILVM LKQQFPRIPQ SSLEISKIRN NKDVGQAILE SYSRVLENLA SKILSRIDDV VEADLLVQRQ
401: MMAEAERRSE SEGGYEYEES EKGLSAETPN SRKLSDFIGW RLSSDTKKHS SMSDIEFFHR TEQEKPMMKS PRALPKKLSY LSKLENMRST SERH

Best Arabidopsis Sequence Match ( AT5G19560.5 )
(BLAST)

001: MFDGRNSGHS SFSSRGDGMH TPEHELAGHA APSTRRGKQN RRSDMEVMKE RFAKLLLGED MSGGGTGETS ALALSNAITK LADSMFGEQM KLQPMYPETK
101: ENWRKEMGWL LSVIDHIVQF VPSRQMGKNG QFTEIMVTKQ RDDLLTNIPA LRKLDSVLLE TLDNFKDQKD FWYVPRDMED ADHNGDWRRD ENWWLPVVKV
201: PTDGLSEESR RWLQNQKDSV AQVLKAATAI NAHVLSEMHV PENYIDSLPK NGKTSLGDFL YKSITEESFD PDYFVSFLDL STEHKVLDLK NRIEASMVIW
301: KRKMCQKEKD GKSQWGSTVS LEKRELFEVR AETILVMLKQ QFPGIPQSSL EVSKIKNNKD VGQAILESYS RVLESLASKI MSRIEDVLEA DRLVQRQLMG
401: EAETRSESEA ESEYEETEKV VAAETPNSRK LSDFIGWRLS SDTKKHSSMS DIEFFHKVEQ EKEKPMMKSP RALPKKFSYL AKLENMRSPS DRH

Arabidopsis Description

ATROPGEF10ROP uanine nucleotide exchange factor 10 [Source:TAIR;Acc:AT5G19560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.