Factsheet for Os02t0272300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G196000.1	Wheat	cytosol	80.31	94.5
TraesCSU01G211800.1	Wheat	cytosol	58.87	92.64
TraesCSU01G217800.1	Wheat	cytosol	59.84	90.29
TraesCSU01G211700.1	Wheat	cytosol	59.84	90.29
OQU84790	Sorghum	cytosol	77.39	90.23
TraesCS6D01G183300.1	Wheat	mitochondrion	89.28	89.98
Zm00001d053307_P002	Maize	cytosol, plastid	83.24	88.41
HORVU6Hr1G050860.4	Barley	mitochondrion	84.02	85.69
Zm00001d016001_P002	Maize	mitochondrion	84.21	80.9
GSMUA_Achr6P14020_001	Banana	cytosol	56.73	67.52
GSMUA_Achr3P03410_001	Banana	nucleus	62.57	63.44
Solyc07g032730.2.1	Tomato	nucleus	49.32	61.86
Solyc06g066650.2.1	Tomato	nucleus	56.14	61.41
PGSC0003DMT400042632	Potato	nucleus	55.17	60.47
KRH44350	Soybean	nucleus	52.83	59.69
PGSC0003DMT400006531	Potato	cytosol	55.36	56.57
Solyc03g120650.2.1	Tomato	cytosol	55.17	56.37
Solyc12g044270.1.1	Tomato	nucleus	57.12	55.81
CDY44926	Canola	nucleus	52.63	54.66
Bra020048.1-P	Field mustard	nucleus	52.63	54.66
CDY42277	Canola	nucleus	52.44	54.45
KRH23439	Soybean	nucleus	56.53	54.31
KRH09881	Soybean	cytosol	56.34	54.22
PGSC0003DMT400040374	Potato	nucleus	49.32	53.83
AT5G19560.4	Thale cress	mitochondrion	53.61	53.71
Os01t0760300-01	Rice	plasma membrane	54.39	53.55
Bra006510.1-P	Field mustard	cytosol	50.88	53.48
CDX88884	Canola	cytosol, plastid	50.68	53.28
KRH39304	Soybean	nucleus	53.22	52.5
KRH47282	Soybean	nucleus	54.78	52.23
CDY58963	Canola	cytosol	37.82	52.15
PGSC0003DMT400097197	Potato	nucleus	57.12	52.04
CDX70882	Canola	cytosol	51.07	51.88
CDX92519	Canola	plastid	50.1	51.71
KRH48369	Soybean	mitochondrion	56.14	51.25
PGSC0003DMT400001020	Potato	nucleus	55.17	50.99
Solyc12g007150.1.1	Tomato	nucleus	54.97	50.81
Os05t0560100-01	Rice	mitochondrion	55.36	49.91
Bra002246.1-P	Field mustard	plastid	50.1	49.71
VIT_11s0016g03740.t01	Wine grape	nucleus	53.61	49.55
Os01t0675000-01	Rice	mitochondrion	53.41	49.46
Os10t0550300-00	Rice	plastid	34.7	37.16
Os09t0544800-01	Rice	nucleus	40.35	36.9
Os01t0849100-01	Rice	cytosol	38.79	36.45
Os07t0481100-01	Rice	cytosol	32.36	36.09
Os04t0559100-00	Rice	cytosol	12.67	35.71
Os05t0454200-01	Rice	nucleus	37.04	33.45
Os02t0702600-02	Rice	cytosol	32.55	30.76

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:4328986	ProteinID:BAD28284.1	ProteinID:BAF08439.1
ProteinID:BAS78061.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	InterPro:IPR005512	EnsemblPlantsGene:Os02g0272300	EnsemblPlants:Os02t0272300-01	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF16	UniProt:Q6EST6	InterPro:RopGEF	UniParc:UPI00003CE67A
RefSeq:XP_015622938.1	SEG:seg	:	:	:	:

Description

guanine nucleotide exchange factor for Rop 3Similar to Pollen-specific kinase partner protein. (Os02t0272300-01)

Coordinates

chr2:+:9885649..9888391

Molecular Weight (calculated)

57458.2 Da

IEP (calculated)

5.719

GRAVY (calculated)

-0.557

Length

513 amino acids

Sequence
(BLAST)

001: MVRFLRRHSL DKNSAQFHRQ LSHDSSSSSS DTADMHEPHG NGSGGTPPLP NGRAAAAGAP RSRFGRDGPP SDLDVMKERF AKLLLGEDMS GTGKGVSSAL
101: ALSNAITNLA ASVFGEHRKL EPMAPDTKER WKKEVGWLLS VTDHIVEFVP TRQTAENGTT MEIMSTAQRR DLQMNVPALR KLDAMLIGYM DNFVDQSEFW
201: YEKGGDNKRD DDKWWMPTVK VPAEGLSEVT RKWLQYQKEC VNQVLKAAMA INAQVLVEME IPEVYIESLP KKGKTSLGDA IYRSITDEEF DPIEFLEGVD
301: LSTEHKVLDL KNRIEASTII WKRKMQTKQE AKSSWGSIIS FEKREQFEER AETILHLLKL QFPGTPQSQL DISKIQYNRD VGYAILESYS RVLESLAYSV
401: MSRIEDVLGA DAAAQNLTAT EAARRLMDGD AAARKLDAME ELEKLNEAPA SMTLYDFMGW HFDQDELMRK KEEGTLDEAG EAKLKKAPSL APKKFSYVDS
501: LSAGGMRSPS ARH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.