Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G400200.2 | Wheat | plastid | 97.68 | 96.99 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 94.83 | 94.16 |
| HORVU1Hr1G086590.2 | Barley | plastid | 92.51 | 77.0 |
| EES19937 | Sorghum | mitochondrion | 70.23 | 71.64 |
| Os05t0560100-01 | Rice | mitochondrion | 71.66 | 70.65 |
| Zm00001d038989_P002 | Maize | nucleus, plastid | 61.85 | 68.04 |
| Zm00001d009549_P002 | Maize | mitochondrion | 65.95 | 67.03 |
| TraesCS6A01G196000.1 | Wheat | cytosol | 45.1 | 58.03 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 43.14 | 51.49 |
| Bra018956.1-P | Field mustard | nucleus | 48.84 | 51.12 |
| Bra021162.1-P | Field mustard | nucleus | 38.86 | 50.23 |
| AT1G52240.1 | Thale cress | nucleus | 47.95 | 49.54 |
| CDY45633 | Canola | nucleus | 46.17 | 49.52 |
| Bra030396.1-P | Field mustard | nucleus | 46.88 | 48.98 |
| CDX87879 | Canola | nucleus | 46.17 | 46.5 |
| Bra027189.1-P | Field mustard | nucleus | 43.85 | 46.42 |
| CDX97723 | Canola | nucleus | 43.49 | 45.86 |
| CDY52982 | Canola | nucleus | 49.02 | 45.76 |
| CDY30136 | Canola | nucleus | 44.74 | 45.64 |
| CDY67259 | Canola | nucleus | 48.84 | 45.59 |
| AT3G16130.1 | Thale cress | nucleus | 43.67 | 45.54 |
| TraesCS3A01G270400.1 | Wheat | plastid | 50.62 | 45.15 |
| CDY28381 | Canola | nucleus | 42.78 | 40.07 |
| TraesCS5A01G340900.1 | Wheat | cytosol | 33.69 | 39.54 |
| CDY20181 | Canola | nucleus | 42.07 | 38.88 |
| TraesCS6A01G405000.1 | Wheat | nucleus | 31.19 | 38.29 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 31.19 | 37.39 |
| TraesCS1A01G208700.1 | Wheat | nucleus | 31.19 | 36.69 |
| TraesCS3A01G364400.1 | Wheat | nucleus | 35.12 | 36.41 |
| TraesCS1A01G280900.2 | Wheat | cytosol | 35.47 | 33.79 |
| TraesCS6A01G270900.1 | Wheat | cytosol | 28.16 | 29.1 |
| Bra021161.1-P | Field mustard | nucleus | 2.14 | 9.02 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G392100.1 | EnsemblPlantsGene:TraesCS1A01G392100 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF3 | PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : |
Description
No Description!
Coordinates
chr1A:-:558592915..558595809
Molecular Weight (calculated)
62216.1 Da
IEP (calculated)
6.903
GRAVY (calculated)
-0.580
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPFLKTGH GRDSRFSFRR RKSGKASSTP SSPLSSVSSE DVALDPGSPT MEPSSKAQTL PCARRMLSRS SCGSRGKLSV DLIPPPLAGG PSDGPRPSTS
101: AAPPQKPPPR PEGPPSDTDM VKEKFSKLLL GEDMSGTGKG VSSALALSNA ITNLAASVFG EQRRLQPMAP EPKARWTKEI DWLLSVTDFI VEFVPSRQVV
201: EDGSTMEVMI TQQRRDLLMN IPALRKLDGM LLDYLDSFGD KQEFWYVKKN DNESEKGDAA EQSDKWWLPT VKVPPEGLSD STRRWLQHQK ELVNQVLKAT
301: MAINANVIME MDVPEAYMES LPKNGKSTLG DSMYKLITDD YFNPEELIAT VDLSNEYNIV DLKNRIEASV VIWQKKMQRD GKWGHGVSHE KRGRFEGRAE
401: NVLLLLKHRF PGISQSALDI SKIQYNRDVG SAILESYSRT LESLAYTVMS RIEDVLHADS LTQDPKQGDS LRMPSLTSDD TDTVVQDAKD EMGRLGRMEP
501: VNSTLFDLVG PRDGTIETMI LESQDPQGKK LSKVSKIGTK RYSYLDKLEN LGGARSPISR H
101: AAPPQKPPPR PEGPPSDTDM VKEKFSKLLL GEDMSGTGKG VSSALALSNA ITNLAASVFG EQRRLQPMAP EPKARWTKEI DWLLSVTDFI VEFVPSRQVV
201: EDGSTMEVMI TQQRRDLLMN IPALRKLDGM LLDYLDSFGD KQEFWYVKKN DNESEKGDAA EQSDKWWLPT VKVPPEGLSD STRRWLQHQK ELVNQVLKAT
301: MAINANVIME MDVPEAYMES LPKNGKSTLG DSMYKLITDD YFNPEELIAT VDLSNEYNIV DLKNRIEASV VIWQKKMQRD GKWGHGVSHE KRGRFEGRAE
401: NVLLLLKHRF PGISQSALDI SKIQYNRDVG SAILESYSRT LESLAYTVMS RIEDVLHADS LTQDPKQGDS LRMPSLTSDD TDTVVQDAKD EMGRLGRMEP
501: VNSTLFDLVG PRDGTIETMI LESQDPQGKK LSKVSKIGTK RYSYLDKLEN LGGARSPISR H
001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
Arabidopsis Description
ROPGEF9Rop guanine nucleotide exchange factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.