Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G388300.1 | Wheat | nucleus | 99.12 | 97.0 |
| HORVU6Hr1G092860.2 | Barley | nucleus | 96.28 | 96.28 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 97.59 | 94.69 |
| Os07t0481100-01 | Rice | cytosol | 83.37 | 82.83 |
| EER99384 | Sorghum | nucleus, plastid | 83.37 | 82.29 |
| Zm00001d021489_P001 | Maize | nucleus, plastid | 82.06 | 80.82 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 56.24 | 53.32 |
| TraesCS1A01G208700.1 | Wheat | nucleus | 54.7 | 52.41 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 53.61 | 52.35 |
| KRH15734 | Soybean | cytosol | 28.23 | 49.62 |
| KRH65102 | Soybean | nucleus | 52.08 | 49.48 |
| Solyc01g094610.2.1 | Tomato | nucleus | 50.77 | 48.64 |
| PGSC0003DMT400000136 | Potato | nucleus | 50.77 | 48.64 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 53.61 | 48.61 |
| AT4G00460.2 | Thale cress | nucleus | 49.45 | 47.78 |
| CDY70620 | Canola | nucleus | 49.02 | 47.76 |
| Bra000971.1-P | Field mustard | nucleus | 49.45 | 47.28 |
| CDY51157 | Canola | nucleus | 47.05 | 47.25 |
| CDY07216 | Canola | cytosol | 49.02 | 47.16 |
| Bra037342.1-P | Field mustard | cytosol | 49.02 | 46.96 |
| KRH48179 | Soybean | nucleus | 38.51 | 46.93 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 7.66 | 46.67 |
| CDX74772 | Canola | nucleus, plastid | 45.95 | 46.67 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 46.39 | 46.09 |
| CDY18892 | Canola | nucleus | 45.51 | 46.02 |
| KRG94270 | Soybean | mitochondrion | 11.16 | 45.95 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 46.39 | 45.79 |
| KRH00737 | Soybean | nucleus, plastid | 50.77 | 45.31 |
| KRH40457 | Soybean | cytosol | 50.55 | 45.12 |
| AT1G01700.4 | Thale cress | nucleus | 49.23 | 43.69 |
| TraesCS5A01G340900.1 | Wheat | cytosol | 42.45 | 40.59 |
| TraesCS3A01G364400.1 | Wheat | nucleus | 46.83 | 39.56 |
| TraesCS6A01G196000.1 | Wheat | cytosol | 36.54 | 38.3 |
| TraesCS1A01G280900.2 | Wheat | cytosol | 46.83 | 36.33 |
| CDX91908 | Canola | cytosol | 49.45 | 34.5 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 34.14 | 33.19 |
| TraesCS1A01G392100.1 | Wheat | plastid | 38.29 | 31.19 |
| TraesCS3A01G270400.1 | Wheat | plastid | 37.64 | 27.34 |
| TraesCS6A01G270900.1 | Wheat | cytosol | 31.95 | 26.89 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G405000.1 | EnsemblPlantsGene:TraesCS6A01G405000 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | ncoils:Coil | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF5 | PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : |
Description
No Description!
Coordinates
chr6A:-:611312562..611314935
Molecular Weight (calculated)
51646.3 Da
IEP (calculated)
6.154
GRAVY (calculated)
-0.476
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSAFPGF HSQYSYDRDY ARPLFRVASF SSERGGDEHQ HMARTASFKV TAAPSRLSQA MSKLSMKKLQ QAVDERSVED EEMELMKEKY TKLLLGEDMS
101: GGGKGVCTAV AISNAITNLY ATVFGTCHRL QSLPPEKRSM WNREMDCLLS ICEYIVEFAP TVQARPDGST HDVMATSPRS DILMNLPALE KLETMLLGIL
201: DSFDKAEFWY ADQRKQSFSE TKKPSFKRNE DKWWLPEPCV PESGLSDSLH RELQHKRDQA SQIHKMAMEI NNAILSEMQI PSSYIETLPK TGKVGTGDAI
301: YRYMSSGDQF SPDHLLDFLN LSSEHEALEI ADRVEAAMYV WRRKASMTHV VTKWENVTEL NADGDKNLIL ASRARSLLLC LKQRFPGLSQ TTLDTSKIQY
401: NKDIGQAILE SYSRVLESLA YSIVSWIDDV LLADENAKQG NSTRIQKQVF SQVSPQR
101: GGGKGVCTAV AISNAITNLY ATVFGTCHRL QSLPPEKRSM WNREMDCLLS ICEYIVEFAP TVQARPDGST HDVMATSPRS DILMNLPALE KLETMLLGIL
201: DSFDKAEFWY ADQRKQSFSE TKKPSFKRNE DKWWLPEPCV PESGLSDSLH RELQHKRDQA SQIHKMAMEI NNAILSEMQI PSSYIETLPK TGKVGTGDAI
301: YRYMSSGDQF SPDHLLDFLN LSSEHEALEI ADRVEAAMYV WRRKASMTHV VTKWENVTEL NADGDKNLIL ASRARSLLLC LKQRFPGLSQ TTLDTSKIQY
401: NKDIGQAILE SYSRVLESLA YSIVSWIDDV LLADENAKQG NSTRIQKQVF SQVSPQR
001: MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV SEDAEEPKDD VVNDVHGDGD EEDSDIDSAE DAELEMMRER
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD
101: FAKLLLGEDM SGSGKGVCTA VTVSNSITNL YATVFGQSLR LQPLSTEKKD LWKREMNCFM SICDYIVEVI PRSLGTNVEI TETKLRSDIL MSLPALRKLD
201: NMLMEILDSF TENEFWYVER GSSSMNSGGG GRDSGTFRKV VVQRKDEKWW LPVPCVPAEG LSEEERKHLR HKRDCASQIH KAALAINDST LNDMDIPDSY
301: LTTLPKSGKA SVGDVIYKQL CTAEKFYPDQ LLDILKITSE HEALELADKV EASLVTWRRK TGGLTHSKSS WDMMKDISGD ADRGNDKNHI LAARARSLLF
401: CLKQRYPELS QTSLDICKIQ FNRDVGKAVL ESYSRVLEGL AYNVVSWIDD VLYVDRTVRN RDD
Arabidopsis Description
ROPGEF4Rop guanine nucleotide exchange factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNP7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.