Factsheet for VIT_15s0046g02530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	VIT_17s0000g07890.t01	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65102	Soybean	nucleus	63.29	66.32
KRH15734	Soybean	cytosol	34.13	66.15
PGSC0003DMT400000136	Potato	nucleus	61.11	64.57
Solyc01g094610.2.1	Tomato	nucleus	60.91	64.36
KRH48179	Soybean	nucleus	47.42	63.73
AT4G00460.2	Thale cress	nucleus	59.72	63.64
CDY07216	Canola	cytosol	59.33	62.95
CDY70620	Canola	nucleus	58.53	62.9
Bra000971.1-P	Field mustard	nucleus	59.52	62.76
Bra037342.1-P	Field mustard	cytosol	59.33	62.68
CDY51157	Canola	nucleus	56.35	62.42
KRH00737	Soybean	nucleus, plastid	61.11	60.16
KRH40457	Soybean	cytosol	60.32	59.38
AT1G01700.4	Thale cress	nucleus	60.52	59.22
GSMUA_Achr5P20570_001	Banana	nucleus	56.35	58.92
CDX74772	Canola	nucleus, plastid	50.79	56.89
Bra004945.1-P	Field mustard	nucleus, plastid	51.59	56.52
CDY18892	Canola	nucleus	50.6	56.42
EES11256	Sorghum	nucleus	52.58	56.26
AT2G45890.1	Thale cress	nucleus, plastid	51.39	55.94
Zm00001d002696_P001	Maize	cytosol	51.19	55.84
Os10t0550300-00	Rice	plastid	52.38	55.11
KRG94270	Soybean	mitochondrion	12.1	54.95
TraesCS1B01G222700.1	Wheat	plastid	51.79	54.6
TraesCS1D01G211900.1	Wheat	nucleus	51.59	54.51
TraesCS1A01G208700.1	Wheat	nucleus	51.39	54.3
Os07t0481100-01	Rice	cytosol	49.4	54.13
TraesCS2B01G426300.1	Wheat	cytosol	49.8	53.98
Zm00001d029850_P001	Maize	nucleus, plastid	52.18	53.78
HORVU1Hr1G053350.4	Barley	nucleus, plastid	50.99	53.77
TraesCS6A01G405000.1	Wheat	nucleus	48.61	53.61
TraesCS2A01G408100.1	Wheat	cytosol	49.6	53.42
EER91970	Sorghum	plastid	51.79	53.37
TraesCS2D01G405400.1	Wheat	nucleus	49.6	53.19
HORVU6Hr1G092860.2	Barley	nucleus	47.62	52.52
EER99384	Sorghum	nucleus, plastid	48.02	52.27
TraesCS6D01G388300.1	Wheat	nucleus	48.41	52.25
Os04t0559100-00	Rice	cytosol	18.85	52.2
Zm00001d021489_P001	Maize	nucleus, plastid	47.82	51.94
TraesCS6B01G449200.1	Wheat	nucleus	48.21	51.59
CDY57376	Canola	cytosol, extracellular, nucleus	7.14	48.0
HORVU2Hr1G096430.13	Barley	mitochondrion	49.4	46.89
CDX91908	Canola	cytosol	59.33	45.65
VIT_13s0019g02710.t01	Wine grape	nucleus	49.4	41.78
VIT_18s0001g00550.t01	Wine grape	cytosol	43.65	41.35
VIT_03s0038g03620.t01	Wine grape	cytosol	46.63	40.03
VIT_08s0007g01380.t01	Wine grape	nucleus	48.02	39.74
VIT_09s0002g04310.t01	Wine grape	cytosol	35.12	38.99
VIT_08s0007g01390.t01	Wine grape	nucleus	41.27	34.96
VIT_11s0016g03740.t01	Wine grape	nucleus	37.7	34.23
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	35.91	19.85

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100246463	wikigene:100246463	MapMan:27.4.3.1	EMBL:AM482406	ProteinID:CAN75305
ProteinID:CAN75305.1	ProteinID:CCB62426	ProteinID:CCB62426.1	UniProt:F6I630	EMBL:FN596755	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	EntrezGene:LOC100246463	wikigene:LOC100246463	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	InterPro:RopGEF	UniParc:UPI0001984EBB	ArrayExpress:VIT_15s0046g02530	EnsemblPlantsGene:VIT_15s0046g02530
EnsemblPlants:VIT_15s0046g02530.t01	RefSeq:XP_002274806	RefSeq:XP_002274806.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:-:19322715..19324825

Molecular Weight (calculated)

57323.7 Da

IEP (calculated)

6.287

GRAVY (calculated)

-0.566

Length

504 amino acids

Sequence
(BLAST)

001: MRRSSSRDEN HDLGYRLPYT VDHFDRSTAH SSTPSARSTA HSSTPSADSI SYMRTYSQSS NFSDRTEDNS SYSYEASASA WPVARIETQT ETPHKQAVLT
101: GLEMKQHKHD LDPKYDDDAL DSELELMKER FSKLLLGEDM SGSGKGVCTA VTISNAITNL YATIFGQNQK LEPLSPEKKS MWKREMNCLL AVCDYMVEFF
201: PSLQTLPNGT SVEVMASRPR SDIHINLPAL QKLDTMLQEI LDSFKETEFW YAEQGKLVSA TRAGSFRLIT QRPDEKWWLP VPCIPRGGLS EKARKDLKHT
301: RDCANQIHKA AMSINSSLLA EMKIPDSYIA ALPKSGRAGL GDAIYRFMNT SDKFSPDQLM DYLHISSEHE ALELADRVEA SMYTWRRKAC VAHSKSSWDM
401: VKQLISETER TDKNYVLAER AESLLFCLKQ RYPELSQTSL DACKIQYNKD VGQAILESYS RVLESLAFSI VAWIEDVLHE DRNMRCKERS VVEDMQNRMS
501: KLDI

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.