Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45633 | Canola | nucleus | 86.0 | 89.29 |
| Bra018956.1-P | Field mustard | nucleus | 87.85 | 88.99 |
| Bra030396.1-P | Field mustard | nucleus | 87.66 | 88.64 |
| CDX87879 | Canola | nucleus | 85.82 | 83.66 |
| CDY67259 | Canola | nucleus | 87.66 | 79.2 |
| CDY52982 | Canola | nucleus | 87.48 | 79.03 |
| AT3G16130.1 | Thale cress | nucleus | 63.54 | 64.13 |
| AT1G79860.1 | Thale cress | nucleus | 59.3 | 62.52 |
| TraesCS3D01G296400.1 | Wheat | cytosol | 47.33 | 55.63 |
| Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 29.28 | 55.4 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 47.33 | 55.27 |
| HORVU3Hr1G073200.1 | Barley | nucleus | 48.25 | 55.04 |
| AT3G24620.1 | Thale cress | nucleus | 52.85 | 54.88 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.41 | 53.62 |
| Os01t0760300-01 | Rice | plasma membrane | 50.83 | 52.98 |
| AT4G13240.1 | Thale cress | nucleus | 50.28 | 52.8 |
| Zm00001d043383_P001 | Maize | nucleus | 49.91 | 51.82 |
| OQU87589 | Sorghum | nucleus | 49.17 | 51.64 |
| TraesCS3B01G304200.1 | Wheat | plastid | 48.62 | 51.16 |
| TraesCS3D01G270200.1 | Wheat | plastid | 48.8 | 51.16 |
| AT5G19560.4 | Thale cress | mitochondrion | 47.51 | 50.39 |
| Zm00001d038989_P002 | Maize | nucleus, plastid | 46.78 | 49.8 |
| EES19937 | Sorghum | mitochondrion | 48.99 | 48.36 |
| TraesCS1D01G400200.2 | Wheat | plastid | 49.91 | 47.96 |
| TraesCS1A01G392100.1 | Wheat | plastid | 49.54 | 47.95 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 49.72 | 47.79 |
| KXG33101 | Sorghum | mitochondrion | 49.17 | 47.76 |
| Os01t0675000-01 | Rice | mitochondrion | 48.43 | 47.47 |
| Os05t0560100-01 | Rice | mitochondrion | 49.72 | 47.45 |
| Zm00001d009549_P002 | Maize | mitochondrion | 46.96 | 46.2 |
| Zm00001d043889_P001 | Maize | mitochondrion | 47.7 | 42.81 |
| HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 48.62 | 42.51 |
| TraesCS3A01G270400.1 | Wheat | plastid | 48.43 | 41.81 |
| HORVU1Hr1G086590.2 | Barley | plastid | 48.43 | 39.02 |
| AT4G00460.2 | Thale cress | nucleus | 33.7 | 38.69 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 32.41 | 38.01 |
| AT5G02010.1 | Thale cress | nucleus | 37.2 | 37.0 |
| AT4G38430.1 | Thale cress | nucleus | 37.02 | 36.68 |
| AT1G01700.4 | Thale cress | nucleus | 33.7 | 35.53 |
| AT5G05940.1 | Thale cress | cytosol | 39.41 | 35.02 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 35.36 | 33.16 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 30.2 | 28.47 |
Protein Annotations
| Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:841654 | UniProt:A0A178W8V0 | ProteinID:AAF29411.1 |
| ProteinID:AEE32773.2 | ArrayExpress:AT1G52240 | EnsemblPlantsGene:AT1G52240 | RefSeq:AT1G52240 | TAIR:AT1G52240 | RefSeq:AT1G52240-TAIR-G |
| EnsemblPlants:AT1G52240.1 | TAIR:AT1G52240.1 | Symbol:ATROPGEF11 | EMBL:BT033039 | GO:GO:0003674 | GO:GO:0005085 |
| GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0048364 | GO:GO:0065009 | GO:GO:0080147 | InterPro:IPR005512 | RefSeq:NP_175634.6 |
| ProteinID:OAP13502.1 | PFAM:PF03759 | PO:PO:0000003 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009049 | PO:PO:0009066 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 | UniProt:Q9M811 | InterPro:RopGEF |
| UniParc:UPI00074481D2 | SEG:seg | : | : | : | : |
Description
ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
Coordinates
chr1:-:19455495..19458069
Molecular Weight (calculated)
61658.7 Da
IEP (calculated)
5.534
GRAVY (calculated)
-0.568
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.