Factsheet for Solyc01g111930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plasma membrane 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062020.2.1
Solyc02g083580.2.1
Solyc03g033420.2.1
Solyc03g114070.2.1
Solyc06g008600.2.1
Solyc06g084040.2.1
Solyc09g065990.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	Solyc06g008600.2.1	AT2G30580.1	21798944
AT4G38430.1	Solyc06g084040.2.1	AT2G30580.1	21798944
AT4G38430.1	Solyc09g065990.2.1	AT2G30580.1	21798944
AT4G38430.1	Solyc03g114070.2.1	AT3G48040.1	21798944
AT4G38430.1	Solyc02g062020.2.1	AT3G51300.1	21798944
AT4G38430.1	Solyc02g083580.2.1	AT3G51300.1	21798944
AT4G38430.1	Solyc03g033420.2.1	AT3G51300.1	21798944
AT4G38430.1	Solyc03g114070.2.1	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047997	Potato	nucleus	97.92	97.92
VIT_03s0038g03620.t01	Wine grape	cytosol	80.59	79.22
KRH24128	Soybean	cytosol	74.52	75.7
KRH29101	Soybean	cytosol, plastid	74.0	75.44
TraesCS5A01G340900.1	Wheat	cytosol	59.62	71.97
AT4G38430.1	Thale cress	nucleus	68.28	71.9
TraesCS5B01G339200.1	Wheat	cytosol	59.97	71.64
TraesCS5D01G346100.1	Wheat	cytosol	59.97	71.49
GSMUA_Achr3P14650_001	Banana	nucleus	70.02	71.13
Zm00001d006269_P001	Maize	cytosol	47.14	70.83
GSMUA_Achr1P18140_001	Banana	nucleus	67.07	69.98
Bra015010.1-P	Field mustard	cytosol	65.51	69.1
CDX85176	Canola	cytosol	65.51	69.1
CDX77457	Canola	cytosol	65.51	69.1
EER99291	Sorghum	nucleus, plastid	66.03	68.16
GSMUA_Achr10P...	Banana	cytosol	60.66	67.57
Os09t0544800-01	Rice	nucleus	65.68	67.56
HORVU5Hr1G085510.1	Barley	nucleus, plastid	65.34	66.61
Zm00001d021464_P002	Maize	nucleus, plastid	65.34	65.34
Solyc04g082110.2.1	Tomato	nucleus	49.22	62.97
GSMUA_Achr2P03580_001	Banana	nucleus	55.11	62.72
Solyc08g006550.2.1	Tomato	nucleus	44.71	48.68
Solyc09g011480.2.1	Tomato	nucleus	47.66	46.77
Solyc01g094610.2.1	Tomato	nucleus	38.3	46.33
Solyc07g032730.2.1	Tomato	nucleus	31.72	44.74
Solyc06g066650.2.1	Tomato	nucleus	35.01	43.07
Solyc10g086660.1.1	Tomato	nucleus	48.53	41.24
Solyc03g120650.2.1	Tomato	cytosol	35.53	40.84
Solyc12g044270.1.1	Tomato	nucleus	36.57	40.19
Solyc12g007150.1.1	Tomato	nucleus	36.57	38.02
Solyc08g075120.2.1	Tomato	extracellular	32.93	33.75
Solyc12g096220.1.1	Tomato	nucleus	31.72	25.14

Protein Annotations

EnsemblPlants:Solyc01g111930.2.1	EnsemblPlantsGene:Solyc01g111930.2	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	InterPro:PRONE_dom
InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	PFAM:PF03759	PFscan:PS51334	SEG:seg
UniParc:UPI0002767AB5	UniProt:K4B455	MapMan:27.4.3.1	:	:	:

Description

No Description!

Coordinates

chr1:-:98087240..98105081

Molecular Weight (calculated)

63360.6 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.337

Length

577 amino acids

Sequence
(BLAST)

001: MGSVSSEEGS DQQSERCGSY SLSADVSESE SSSSSFSCRR YDAEGASSSM ASSPLPCRRF TAKSEFPTPV LPPFMFPAIG GKDVVLCNDK SEKRQADLSE
101: IDLMKERFAK LLLGEDMSGG GKGVSTALAI SNAITNLSAT IFGELWRLEP LALQKKAMWC REMEWLLCVS DSIVELVPSI QQFPGGGTYE VMATRPRSDL
201: YLNLPALKKL DAMLISILDG FRDTEFWYVD RGIVLAEGDD CDSFPPGIGF GRPSVRQEEK WWLPCPKVPP KGLSEEARKR VQQCRDCTNQ ILKAALAINS
301: NVLAEVETPS AYIETLPKSG KACLGDIIYR YITADNFSPE CLLDCLDLSS EHHTLEVANR IEAAVHVWRL KDQKKHPHKR KSKGKSWGGK VKGLVADGGK
401: NQYLAERAET LLHSLRLRFP GLPQTALDMN KIQYNKDVGQ SILESYSRVM ESLAFNIMAR IDDVLFVDDA TKRCAAAENT SFFNRGGLGG LPVQKRMSPS
501: PFSIQHSPFT SPFATPTFCL SPLIGSPGKT ASPSKAGSKV LPTAKLEKVS PTDLDKLWSY AGNLSARRPS KDAPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.