Factsheet for Solyc06g008600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082100.2.1
Solyc03g083000.2.1
Solyc06g048630.2.1
Solyc06g049040.2.1
Solyc06g074190.2.1
Solyc09g009210.2.1
Solyc09g091060.2.1
Solyc10g005220.2.1
Solyc10g083520.1.1
Solyc11g068720.1.1
Solyc12g097060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT2G30580.1	Solyc10g005220.2.1	AT1G30860.1	21798944
AT2G30580.1	Solyc06g048630.2.1	AT2G40620.1	21798944
AT2G30580.1	Solyc06g049040.2.1	AT2G40620.1	21798944
AT2G30580.1	Solyc03g083000.2.1	AT2G46550.1	21798944
AT2G30580.1	Solyc09g009210.2.1	AT3G09980.1	21798944
AT2G30580.1	Solyc10g083520.1.1	AT3G09980.1	21798944
AT2G30580.1	Solyc09g091060.2.1	AT4G13540.1	21798944
AT2G30580.1	Solyc12g097060.1.1	AT4G13540.1	21798944
AT2G30580.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT2G30580.1	Solyc11g068720.1.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013629	Potato	nucleus	65.79	93.86
Solyc09g065990.2.1	Tomato	nucleus	69.62	67.67
Solyc06g084040.2.1	Tomato	nucleus	66.75	64.73
VIT_07s0141g00610.t01	Wine grape	nucleus	66.27	64.42
KRG95629	Soybean	nucleus	57.66	56.31
Bra022807.1-P	Field mustard	cytosol	9.33	55.71
KRH67309	Soybean	nucleus	58.13	54.61
CDY47131	Canola	nucleus	51.67	51.8
GSMUA_Achr9P10710_001	Banana	nucleus	48.8	51.26
CDY10748	Canola	nucleus	51.44	51.07
KRH32110	Soybean	nucleus	52.39	51.05
CDX97807	Canola	nucleus	50.0	50.24
KRH71326	Soybean	mitochondrion, nucleus	51.67	50.12
AT2G30580.1	Thale cress	nucleus	50.24	50.0
CDY29659	Canola	nucleus	49.76	49.41
Bra018304.1-P	Field mustard	nucleus	50.96	49.31
AT1G06770.1	Thale cress	nucleus	49.28	48.93
Bra021651.1-P	Field mustard	nucleus	39.47	46.88
CDY23989	Canola	nucleus	47.61	46.39
Os03t0741700-00	Rice	cytosol	20.1	43.75
GSMUA_Achr4P17750_001	Banana	nucleus	40.19	43.19
GSMUA_Achr5P03230_001	Banana	nucleus	44.74	42.5
TraesCS5D01G388500.1	Wheat	nucleus	47.37	38.08
TraesCS5A01G378600.1	Wheat	nucleus	46.17	37.99
Os12t0600200-03	Rice	cytosol, nucleus	31.1	37.79
TraesCS5B01G382100.1	Wheat	nucleus	46.17	37.4
HORVU5Hr1G093720.3	Barley	nucleus	46.41	37.24
CDY06664	Canola	nucleus	33.97	37.08
TraesCS5D01G069800.1	Wheat	nucleus	40.19	35.59
Bra015526.1-P	Field mustard	nucleus	20.81	35.51
TraesCS5A01G058000.1	Wheat	nucleus	39.95	35.38
Zm00001d030985_P001	Maize	nucleus	39.95	35.08
Zm00001d041405_P001	Maize	nucleus	40.67	34.98
Os03t0632800-01	Rice	nucleus	36.12	34.95
TraesCS5B01G065600.1	Wheat	cytosol	39.23	34.75
HORVU5Hr1G014430.6	Barley	nucleus	39.23	34.6
KXG37982	Sorghum	nucleus	41.63	33.72
Zm00001d033322_P001	Maize	nucleus	42.34	33.65
TraesCS5A01G381800.1	Wheat	mitochondrion	29.43	32.8
TraesCS5D01G391100.1	Wheat	mitochondrion	29.19	32.53
Bra015525.1-P	Field mustard	cytosol	32.54	32.46
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	11.48	32.0
TraesCS5B01G385300.1	Wheat	mitochondrion	29.43	30.75
OQU79520	Sorghum	nucleus	39.23	29.71
Zm00001d013303_P001	Maize	nucleus	26.79	28.79
KXG37592	Sorghum	mitochondrion, nucleus	33.49	28.69
HORVU5Hr1G094160.2	Barley	plastid	28.95	27.31
Zm00001d033967_P001	Maize	nucleus	24.88	27.23
Solyc09g083310.1.1	Tomato	nucleus	22.25	23.25
Solyc09g083300.1.1	Tomato	nucleus, plastid	14.35	22.47

Protein Annotations

EnsemblPlants:Solyc06g008600.2.1	EnsemblPlantsGene:Solyc06g008600.2	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	PFAM:PF13923	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000276690C	UniProt:K4C3P0
MapMan:12.3.5.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:2502832..2509577

Molecular Weight (calculated)

47053.4 Da

IEP (calculated)

9.264

GRAVY (calculated)

-0.575

Length

418 amino acids

Sequence
(BLAST)

001: MKNQLVKRES IVACMSCPLC HKLFRDATTI SECLHTFCRK CIYKKLSDED WECCPVCNID LGCVPLEKLR PDHKLEDVRA KIFPYKRRKV KEPEIMPSVT
101: LPVRRKERSL SSLGVSTPRV STHTGMTGRR SKSVARKALR GSTFSTEKAI KNEEDYGEES DSSSSPDTLT KSSQSKRQNY SNAEPSSHPT SDKGTDNGTE
201: QQEGKVDLWK PLDCLVEVAN KNKCSRFTSQ GSVYKTESLH CHDKEHGQKL KVQAEKYSCV PVPAESEKTK KLRRIRRKRA STFGEFSISP QAVLDSISVK
301: CERRTNPIWF SLVASEDQDG SAPLPQISAG YLRIKDGNIP VLFIQKYLMK KLNLSSEDEV EIRYMGQLIV PTLQLNSLVD MWLQTTSSER VPAIVGSSAN
401: DFVMVLAYAR KVPSLMSS

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.