Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10748 | Canola | nucleus | 98.08 | 97.15 |
| AT2G30580.1 | Thale cress | nucleus | 83.45 | 82.86 |
| CDX97807 | Canola | nucleus | 78.18 | 78.37 |
| CDY29659 | Canola | nucleus | 78.9 | 78.15 |
| CDY23989 | Canola | nucleus | 75.54 | 73.43 |
| VIT_07s0141g00610.t01 | Wine grape | nucleus | 56.83 | 55.12 |
| PGSC0003DMT400038984 | Potato | nucleus | 55.88 | 54.19 |
| KRG95629 | Soybean | nucleus | 55.4 | 53.97 |
| Solyc09g065990.2.1 | Tomato | nucleus | 54.92 | 53.26 |
| KRH67309 | Soybean | nucleus | 56.59 | 53.03 |
| Solyc06g008600.2.1 | Tomato | nucleus | 51.8 | 51.67 |
| Solyc06g084040.2.1 | Tomato | nucleus | 53.0 | 51.28 |
| PGSC0003DMT400051660 | Potato | nucleus | 53.0 | 48.89 |
| KRH32110 | Soybean | nucleus | 49.88 | 48.48 |
| KRH71326 | Soybean | mitochondrion, nucleus | 49.88 | 48.26 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 45.32 | 47.49 |
| PGSC0003DMT400013629 | Potato | nucleus | 32.37 | 46.08 |
| Os03t0741700-00 | Rice | cytosol | 19.66 | 42.71 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 44.84 | 42.5 |
| CDY06664 | Canola | nucleus | 38.61 | 42.04 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 38.61 | 41.39 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 30.94 | 37.5 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 33.33 | 37.07 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 33.09 | 36.8 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 45.08 | 36.43 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 43.88 | 36.02 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 44.84 | 35.96 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 44.36 | 35.51 |
| KXG37982 | Sorghum | nucleus | 43.41 | 35.08 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 33.33 | 34.75 |
| Zm00001d041405_P001 | Maize | nucleus | 40.05 | 34.36 |
| Zm00001d030985_P001 | Maize | nucleus | 39.09 | 34.24 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 38.61 | 34.11 |
| Zm00001d033322_P001 | Maize | nucleus | 42.93 | 34.03 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 38.13 | 33.69 |
| Os03t0632800-01 | Rice | nucleus | 34.77 | 33.56 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 37.65 | 33.26 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 36.93 | 32.49 |
| OQU79520 | Sorghum | nucleus | 40.05 | 30.25 |
| HORVU5Hr1G094160.2 | Barley | plastid | 31.89 | 30.02 |
| Zm00001d013303_P001 | Maize | nucleus | 27.82 | 29.82 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 34.77 | 29.71 |
| CDY61240 | Canola | nucleus | 12.71 | 29.44 |
| Zm00001d033967_P001 | Maize | nucleus | 26.62 | 29.06 |
| CDX94870 | Canola | nucleus | 26.86 | 24.94 |
| CDX92974 | Canola | cytosol | 26.62 | 23.97 |
Protein Annotations
| EnsemblPlants:CDY47131 | EnsemblPlantsGene:GSBRNA2T00086778001 | Gene3D:3.30.40.10 | GO:A0A078IBC1 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | PFAM:PF13923 |
| PFscan:PS50089 | ProteinID:CDY47131 | ProteinID:CDY47131.1 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0004EDE244 | UniProt:A0A078IBC1 | MapMan:12.3.5.1.1.1 | : | : |
Description
BnaC04g13880DBnaC04g13880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBC1]
Coordinates
chrLK032698:-:149708..153857
Molecular Weight (calculated)
46965.0 Da
IEP (calculated)
9.276
GRAVY (calculated)
-0.709
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEMVAKVK RETVVACMTC SLCDNLLRDA TTISECLHTF CRKCIYEKIT EDEIECCPVC DIDLGGAPLE KLRPDHILQD LKAKIFTPKR KRERAPEVVS
101: SITLPARRKE RSISSLVVST PRVSAQTGTT GKRTKSLMRK DVLGSGSFTK RTVKKEEEFG DDHTESGSSP ETLKDFTQSK RQSSYAEPSQ SLSNRRNKDG
201: AEPWDSKLNL WKPLNFLVDV ANGTKSEHGN ASHADVQGNK TKTKDYKRKC KLEDEIRNNG DPTTSETATV KRTRRTRRKR SSTFGDSRIP PLPDSESLKH
301: ERRKGPVWFS LVASNNQEGE TSLPQIPANY LRIRDGNIPV SFIQKYLMRK LDLKSETEVE IRCMGEAVIP TLELHSLVEL WLETTSKHER VAATIGSSAK
401: EFVMVLAYAR KVPECTN
101: SITLPARRKE RSISSLVVST PRVSAQTGTT GKRTKSLMRK DVLGSGSFTK RTVKKEEEFG DDHTESGSSP ETLKDFTQSK RQSSYAEPSQ SLSNRRNKDG
201: AEPWDSKLNL WKPLNFLVDV ANGTKSEHGN ASHADVQGNK TKTKDYKRKC KLEDEIRNNG DPTTSETATV KRTRRTRRKR SSTFGDSRIP PLPDSESLKH
301: ERRKGPVWFS LVASNNQEGE TSLPQIPANY LRIRDGNIPV SFIQKYLMRK LDLKSETEVE IRCMGEAVIP TLELHSLVEL WLETTSKHER VAATIGSSAK
401: EFVMVLAYAR KVPECTN
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.