Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17934 | Canola | cytosol | 86.54 | 60.0 |
| CDY32440 | Canola | cytosol | 84.62 | 56.41 |
| CDY25859 | Canola | cytosol | 84.62 | 56.41 |
| CDY66899 | Canola | nucleus | 86.54 | 52.33 |
| CDY60156 | Canola | cytosol, plastid | 89.42 | 52.25 |
| CDY00898 | Canola | cytosol, plastid | 89.42 | 52.25 |
| CDX67549 | Canola | nucleus | 79.81 | 52.2 |
| CDY70153 | Canola | nucleus, plastid | 86.54 | 51.43 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 87.5 | 51.12 |
| CDY13331 | Canola | nucleus | 78.85 | 50.62 |
| KRG96151 | Soybean | nucleus | 80.77 | 50.3 |
| KRH67862 | Soybean | nucleus | 80.77 | 50.3 |
| CDX74002 | Canola | nucleus | 85.58 | 49.44 |
| CDX78133 | Canola | nucleus | 75.96 | 47.88 |
| CDX73594 | Canola | nucleus | 75.96 | 47.59 |
| CDY10366 | Canola | nucleus | 75.96 | 45.66 |
| CDX70295 | Canola | nucleus | 75.96 | 45.66 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 72.12 | 45.18 |
| Solyc09g009210.2.1 | Tomato | nucleus | 71.15 | 44.58 |
| PGSC0003DMT400007017 | Potato | nucleus | 71.15 | 44.58 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 72.12 | 44.12 |
| Solyc10g083520.1.1 | Tomato | plastid | 71.15 | 43.53 |
| CDY43720 | Canola | nucleus | 73.08 | 43.43 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 72.12 | 42.61 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 72.12 | 42.61 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 72.12 | 42.61 |
| CDY43719 | Canola | plastid | 75.96 | 41.36 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 59.62 | 38.99 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 65.38 | 38.86 |
| Os04t0408600-01 | Rice | cytosol | 62.5 | 38.46 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 61.54 | 36.99 |
| EES12098 | Sorghum | nucleus | 58.65 | 36.09 |
| Zm00001d025338_P001 | Maize | nucleus | 58.65 | 35.88 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 57.69 | 35.5 |
| CDX71428 | Canola | cytosol | 57.69 | 35.5 |
| Zm00001d016683_P001 | Maize | nucleus | 56.73 | 35.33 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 56.73 | 34.91 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 56.73 | 34.91 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 56.73 | 34.91 |
| CDX79678 | Canola | cytosol | 50.96 | 34.64 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 56.73 | 34.5 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.73 | 33.91 |
| Os02t0528100-01 | Rice | cytosol | 55.77 | 33.33 |
| CDY13335 | Canola | cytosol | 52.88 | 33.33 |
| CDX67543 | Canola | cytosol, plastid | 52.88 | 33.33 |
| EES06901 | Sorghum | nucleus | 56.73 | 32.78 |
| CDY69705 | Canola | cytosol | 5.77 | 25.0 |
| CDY71050 | Canola | cytosol | 55.77 | 19.93 |
Protein Annotations
| EnsemblPlants:CDY27436 | EnsemblPlantsGene:GSBRNA2T00037416001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | ProteinID:CDY27436 | ProteinID:CDY27436.1 | UniParc:UPI0004EE38B3 | UniProt:A0A078GQ55 | MapMan:35.2 |
Description
BnaC03g64760DBnaC03g64760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ55]
Coordinates
chrLK032204:+:357087..358926
Molecular Weight (calculated)
12329.4 Da
IEP (calculated)
10.178
GRAVY (calculated)
-0.646
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIRERVQAQ LGRVEKETKR LALIREELEG LADPMRKEVA LVRKKIDSVN KELKPLGHTV QKKEREYKEA LEAFNEKNRE KVQLITKLME LSQLIIEYIV
101: IKMK
101: IKMK
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.