Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016683_P001 | Maize | nucleus | 75.29 | 78.44 |
| CDY69705 | Canola | cytosol | 10.34 | 75.0 |
| EES06901 | Sorghum | nucleus | 72.99 | 70.56 |
| Os04t0408600-01 | Rice | cytosol | 67.24 | 69.23 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 59.2 | 58.86 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 57.47 | 58.14 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 52.87 | 57.86 |
| Bra017239.1-P | Field mustard | cytosol | 43.1 | 57.69 |
| KRH67862 | Soybean | nucleus | 55.17 | 57.48 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 54.6 | 57.23 |
| KRG96151 | Soybean | nucleus | 54.6 | 56.89 |
| CDY27436 | Canola | cytosol | 33.33 | 55.77 |
| Solyc09g009210.2.1 | Tomato | nucleus | 52.87 | 55.42 |
| PGSC0003DMT400007017 | Potato | nucleus | 52.87 | 55.42 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 54.6 | 54.91 |
| PGSC0003DMT400068276 | Potato | nucleus | 53.45 | 53.76 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 51.72 | 52.94 |
| Solyc11g066970.1.1 | Tomato | nucleus | 52.3 | 52.91 |
| KRH25180 | Soybean | plastid | 53.45 | 52.84 |
| KRG92044 | Soybean | nucleus | 51.15 | 52.66 |
| KRH30497 | Soybean | plastid | 52.87 | 52.57 |
| Bra028542.1-P | Field mustard | nucleus | 47.7 | 52.53 |
| Solyc10g083520.1.1 | Tomato | plastid | 51.15 | 52.35 |
| KRH34738 | Soybean | cytosol | 51.72 | 52.33 |
| CDX67549 | Canola | nucleus | 47.7 | 52.2 |
| CDY13331 | Canola | nucleus | 48.28 | 51.85 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 52.87 | 51.69 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 52.3 | 51.12 |
| CDY60156 | Canola | cytosol, plastid | 52.3 | 51.12 |
| Bra012002.1-P | Field mustard | nucleus | 47.7 | 50.92 |
| CDY66899 | Canola | nucleus | 50.0 | 50.58 |
| CDX73594 | Canola | nucleus | 47.7 | 50.0 |
| CDX78133 | Canola | nucleus | 47.13 | 49.7 |
| Bra006959.1-P | Field mustard | nucleus | 47.13 | 49.7 |
| CDX71428 | Canola | cytosol | 47.7 | 49.11 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 47.7 | 49.11 |
| CDY13335 | Canola | cytosol | 45.98 | 48.48 |
| CDX74002 | Canola | nucleus | 50.0 | 48.33 |
| Bra001292.1-P | Field mustard | nucleus | 50.0 | 48.33 |
| CDY00898 | Canola | cytosol, plastid | 49.43 | 48.31 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 48.28 | 48.28 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 48.28 | 48.28 |
| CDX67543 | Canola | cytosol, plastid | 45.4 | 47.88 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 45.4 | 47.88 |
| PGSC0003DMT400050208 | Potato | cytosol | 44.83 | 47.85 |
| Solyc11g007330.1.1 | Tomato | nucleus | 44.83 | 47.56 |
| CDY17934 | Canola | cytosol | 40.8 | 47.33 |
| AT2G27740.1 | Thale cress | nucleus | 47.13 | 47.13 |
| AT3G52900.1 | Thale cress | cytosol | 44.25 | 46.95 |
| CDY43720 | Canola | nucleus | 45.98 | 45.71 |
| CDY10366 | Canola | nucleus | 45.4 | 45.66 |
| AT5G03660.1 | Thale cress | nucleus | 45.4 | 45.66 |
| CDX70295 | Canola | nucleus | 45.4 | 45.66 |
| AT3G52920.1 | Thale cress | nucleus | 46.55 | 45.0 |
| CDY32440 | Canola | cytosol | 40.23 | 44.87 |
| CDY25859 | Canola | cytosol | 40.23 | 44.87 |
| CDY70153 | Canola | nucleus, plastid | 44.83 | 44.57 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 39.66 | 44.52 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 44.83 | 44.32 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 44.83 | 44.32 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 44.83 | 44.32 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 44.83 | 44.32 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 48.85 | 44.04 |
| Bra017238.1-P | Field mustard | plastid | 47.13 | 43.16 |
| CDY43719 | Canola | plastid | 47.13 | 42.93 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 47.7 | 42.56 |
| CDX79678 | Canola | cytosol | 36.21 | 41.18 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 40.8 | 35.15 |
| Bra023068.1-P | Field mustard | nucleus | 48.28 | 29.27 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 14.37 | 28.41 |
| CDY71050 | Canola | cytosol | 33.33 | 19.93 |
| Bra027585.1-P | Field mustard | plastid | 35.06 | 13.23 |
Protein Annotations
| EMBL:AK063839 | EnsemblPlants:Os02t0528100-01 | EnsemblPlantsGene:Os02g0528100 | EntrezGene:4329531 | InterPro:GORAB | PANTHER:PTHR21470 |
| PANTHER:PTHR21470:SF6 | PFAM:PF04949 | ProteinID:BAD25418.1 | ProteinID:BAD25600.1 | ProteinID:BAF08922.1 | ProteinID:BAS79007.1 |
| ProteinID:EAZ23284.1 | RefSeq:XP_015624735.1 | SEG:seg | UniParc:UPI00003B4470 | UniProt:Q6H6P9 | MapMan:35.2 |
Description
Protein of unknown function DUF662 family protein. (Os02t0528100-01);Similar to predicted protein. (Os02t0528100-02)
Coordinates
chr2:-:19352578..19354894
Molecular Weight (calculated)
19793.7 Da
IEP (calculated)
6.713
GRAVY (calculated)
-0.935
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MECGGGGREQ QMQIVCVRGG GGGGGGGGGE EDGSSEWDQS SSRSALSLFK EKEEEIERKK LEVREKVFSM LGRVEEETKR LAFIRQELEV MSDPTRREVE
101: TIRKRIDKVN RQLKPLGKNC LKKEKEYKAC LEAYNEKSNE KATLVNRLME LVGESEQLRM KKLEELNKTV ESLY
101: TIRKRIDKVN RQLKPLGKNC LKKEKEYKAC LEAYNEKSNE KATLVNRLME LVGESEQLRM KKLEELNKTV ESLY
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEL VGESEKLRMI KLEELSKSIE TV
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEL VGESEKLRMI KLEELSKSIE TV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.