Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92044 | Soybean | nucleus | 55.44 | 63.31 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 54.4 | 63.25 |
| KRH34738 | Soybean | cytosol | 55.96 | 62.79 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 54.4 | 61.05 |
| PGSC0003DMT400050208 | Potato | cytosol | 49.22 | 58.28 |
| Solyc11g007330.1.1 | Tomato | nucleus | 49.22 | 57.93 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 47.67 | 57.86 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 49.22 | 57.58 |
| CDX67543 | Canola | cytosol, plastid | 49.22 | 57.58 |
| CDY13335 | Canola | cytosol | 49.22 | 57.58 |
| AT3G52900.1 | Thale cress | cytosol | 48.7 | 57.32 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 49.74 | 54.86 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 44.04 | 54.84 |
| Os04t0408600-01 | Rice | cytosol | 47.15 | 53.85 |
| Zm00001d016683_P001 | Maize | nucleus | 44.56 | 51.5 |
| EES12098 | Sorghum | nucleus | 45.08 | 51.48 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 44.56 | 50.89 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 44.56 | 50.89 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 45.08 | 50.88 |
| Zm00001d025338_P001 | Maize | nucleus | 44.56 | 50.59 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 44.04 | 50.3 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 45.08 | 50.29 |
| Os02t0528100-01 | Rice | cytosol | 44.04 | 48.85 |
| EES06901 | Sorghum | nucleus | 44.04 | 47.22 |
Protein Annotations
| ArrayExpress:VIT_13s0074g00640 | EMBL:FN596753 | EnsemblPlants:VIT_13s0074g00640.t01 | EnsemblPlantsGene:VIT_13s0074g00640 | EntrezGene:100262498 | InterPro:GORAB |
| ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF3 | PFAM:PF04949 | ProteinID:CBI40236 | ProteinID:CBI40236.3 |
| RefSeq:XP_010658727.1 | SEG:seg | UniParc:UPI0001BE533B | UniProt:D7UBX1 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr13:-:8797077..8798902
Molecular Weight (calculated)
22497.1 Da
IEP (calculated)
6.579
GRAVY (calculated)
-0.946
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEVNEAAAA ETSKYRNKLS YKLQQHPPNI GLQMQKTKNN LSSSGRLATM MMMEDEEEDV TRSAISTLQS REEEIERKKM EVRQKVELQL SRAEEETRRL
101: AQIWEELEVL ADPLRKEVAV VRKKIDMANR DIKPLGQSCQ KKEKEYKEAL EAFNEKNREK AQLVTTLMEL LSESEKLRMK KLEDLSKHVD STL
101: AQIWEELEVL ADPLRKEVAV VRKKIDMANR DIKPLGQSCQ KKEKEYKEAL EAFNEKNREK AQLVTTLMEL LSESEKLRMK KLEDLSKHVD STL
001: MSSKNNSGAA AVSGVNTNGK LPMEDNEEEE IWKVAVTRFQ AREEEIERKK MTVKEKVQQR LGFAEEATRC LTQTLEELEI MGDPMRKEVG MVRKKIDMAN
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
Arabidopsis Description
RAB6-interacting golgin (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q9LFA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.