Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g007330.1.1 | Tomato | nucleus | 96.32 | 95.73 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 56.44 | 55.76 |
| CDX67543 | Canola | cytosol, plastid | 56.44 | 55.76 |
| CDY13335 | Canola | cytosol | 56.44 | 55.76 |
| PGSC0003DMT400007017 | Potato | nucleus | 56.44 | 55.42 |
| KRG92044 | Soybean | nucleus | 57.06 | 55.03 |
| AT3G52900.1 | Thale cress | cytosol | 54.6 | 54.27 |
| KRH34738 | Soybean | cytosol | 57.06 | 54.07 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 51.53 | 52.83 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 53.99 | 51.76 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 49.08 | 51.61 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 58.28 | 49.22 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 52.15 | 48.57 |
| PGSC0003DMT400068276 | Potato | nucleus | 51.53 | 48.55 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 49.08 | 46.24 |
| Os04t0408600-01 | Rice | cytosol | 47.85 | 46.15 |
| Zm00001d016683_P001 | Maize | nucleus | 46.63 | 45.51 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 46.63 | 44.97 |
| Os02t0528100-01 | Rice | cytosol | 47.85 | 44.83 |
| Zm00001d025338_P001 | Maize | nucleus | 46.63 | 44.71 |
| EES12098 | Sorghum | nucleus | 46.01 | 44.38 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.01 | 43.86 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 45.4 | 43.79 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 45.4 | 43.79 |
| EES06901 | Sorghum | nucleus | 44.17 | 40.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400050208 | EnsemblPlantsGene:PGSC0003DMG400019496 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF3 |
| PFAM:PF04949 | PGSC:PGSC0003DMG400019496 | SEG:seg | UniParc:UPI0002962490 | UniProt:M1BPX8 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019496]
Coordinates
chr11:+:4988718..4991648
Molecular Weight (calculated)
18976.6 Da
IEP (calculated)
6.905
GRAVY (calculated)
-1.010
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLQSVSSS GRTSTSEDNN NINDNEDQEM TKLALASFQA REEQIERKKM EVKGKVESQL TRAEEETRRL VRVWEELEVL TDPMRKEVAM VRKKIDVINR
101: EIKSLGQSCQ KKEKEYREVL EAFNEKNNEK TQLTSTLVEL VKESEKLRMG KLEELSKVLN PKR
101: EIKSLGQSCQ KKEKEYREVL EAFNEKNNEK TQLTSTLVEL VKESEKLRMG KLEELSKVLN PKR
001: MSSKNNSGAA AVSGVNTNGK LPMEDNEEEE IWKVAVTRFQ AREEEIERKK MTVKEKVQQR LGFAEEATRC LTQTLEELEI MGDPMRKEVG MVRKKIDMAN
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
Arabidopsis Description
RAB6-interacting golgin (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q9LFA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.