Factsheet for GSMUA_Achr2P20290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr1P24640_001
GSMUA_Achr2P20290_001
GSMUA_Achr3P18940_001
GSMUA_Achr4P17470_001
GSMUA_Achr8P16080_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36410.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT2G36410.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT2G36410.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr1P24640_001	AT3G01180.1	21798944
AT3G09980.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT3G52920.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT3G52920.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT3G52920.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16080_001	Banana	nucleus	73.41	72.57
CDY69705	Canola	cytosol	9.25	66.67
GSMUA_Achr3P18940_001	Banana	nucleus	60.12	65.41
KRG96151	Soybean	nucleus	61.27	63.47
KRH67862	Soybean	nucleus	60.69	62.87
VIT_06s0061g01440.t01	Wine grape	nucleus	61.27	61.63
CDY27436	Canola	cytosol	36.99	61.54
Bra017239.1-P	Field mustard	cytosol	46.24	61.54
Os04t0408600-01	Rice	cytosol	58.96	60.35
VIT_08s0007g03770.t01	Wine grape	nucleus	57.8	60.24
TraesCS2D01G290400.1	Wheat	nucleus	58.38	59.76
TraesCS2A01G292600.1	Wheat	nucleus	58.38	59.76
Solyc11g066970.1.1	Tomato	nucleus	58.96	59.3
HORVU2Hr1G072420.11	Barley	nucleus	57.8	59.17
Bra028542.1-P	Field mustard	nucleus	53.76	58.86
Zm00001d016683_P001	Maize	nucleus	56.65	58.68
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	57.8	58.48
CDY13331	Canola	nucleus	54.34	58.02
CDX67549	Canola	nucleus	53.18	57.86
Zm00001d025338_P001	Maize	nucleus	56.65	57.65
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	56.65	57.65
Solyc10g083520.1.1	Tomato	plastid	56.65	57.65
EES12098	Sorghum	nucleus	56.07	57.4
CDY60156	Canola	cytosol, plastid	58.96	57.3
Bra029810.1-P	Field mustard	cytosol, plastid	58.96	57.3
PGSC0003DMT400068276	Potato	nucleus	57.23	57.23
AT3G09980.1	Thale cress	nucleus, plastid	58.38	56.74
PGSC0003DMT400007017	Potato	nucleus	54.34	56.63
Solyc09g009210.2.1	Tomato	nucleus	54.34	56.63
KRH30497	Soybean	plastid	57.23	56.57
CDY66899	Canola	nucleus	56.07	56.4
CDX78133	Canola	nucleus	53.76	56.36
KRH25180	Soybean	plastid	57.23	56.25
Bra006959.1-P	Field mustard	nucleus	53.18	55.76
CDY00898	Canola	cytosol, plastid	57.23	55.62
CDX73594	Canola	nucleus	53.18	55.42
Bra001292.1-P	Field mustard	nucleus	57.23	55.0
Os02t0528100-01	Rice	cytosol	54.91	54.6
CDX74002	Canola	nucleus	56.65	54.44
CDY17934	Canola	cytosol	46.24	53.33
EES06901	Sorghum	nucleus	54.91	52.78
KRG92044	Soybean	nucleus	50.87	52.07
CDY25859	Canola	cytosol	46.82	51.92
CDY32440	Canola	cytosol	46.82	51.92
Bra012002.1-P	Field mustard	nucleus	48.55	51.53
KRH34738	Soybean	cytosol	50.87	51.16
AT3G52920.1	Thale cress	nucleus	53.18	51.11
AT5G03660.1	Thale cress	nucleus	50.87	50.87
CDX71428	Canola	cytosol	49.13	50.3
CDY43720	Canola	nucleus	50.87	50.29
CDY70153	Canola	nucleus, plastid	50.29	49.71
CDY04510	Canola	cytosol, nucleus, plastid	48.55	49.7
CDY10366	Canola	nucleus	49.13	49.13
CDX70295	Canola	nucleus	49.13	49.13
PGSC0003DMT400050208	Potato	cytosol	46.24	49.08
CDY30533	Canola	cytosol, mitochondrion, nucleus, plastid	49.13	48.85
AT2G27740.1	Thale cress	nucleus	49.13	48.85
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	49.13	48.85
Solyc11g007330.1.1	Tomato	nucleus	45.66	48.17
CDX84559	Canola	cytosol, nucleus, plastid	48.55	47.73
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	48.55	47.73
Bra017238.1-P	Field mustard	plastid	52.02	47.37
CDY43719	Canola	plastid	52.02	47.12
AT2G36355.1	Thale cress	cytosol, extracellular, nucleus	42.2	47.1
AT2G36410.1	Thale cress	nucleus, plastid	52.6	46.67
CDY57618	Canola	cytosol, mitochondrion, nucleus	47.4	46.59
CDX79677	Canola	cytosol, mitochondrion, nucleus	47.4	46.59
CDX79678	Canola	cytosol	39.88	45.1
VIT_13s0074g00640.t01	Wine grape	cytosol	50.29	45.08
Bra028539.1-P	Field mustard	cytosol, plastid	42.2	44.24
CDX67543	Canola	cytosol, plastid	42.2	44.24
AT3G52900.1	Thale cress	cytosol	41.62	43.9
CDY13335	Canola	cytosol	41.62	43.64
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	45.09	38.61
Bra013746.1-P	Field mustard	nucleus, plastid	19.08	37.5
Bra023068.1-P	Field mustard	nucleus	52.6	31.71
CDY71050	Canola	cytosol	36.99	21.99
Bra027585.1-P	Field mustard	plastid	40.46	15.18

Protein Annotations

EnsemblPlants:GSMUA_Achr2P20290_001	EnsemblPlants:GSMUA_Achr2T20290_001	EnsemblPlantsGene:GSMUA_Achr2G20290_001	InterPro:GORAB	PANTHER:PTHR21470	PANTHER:PTHR21470:SF6
PFAM:PF04949	SEG:seg	UniParc:UPI0002952C4B	UniProt:M0S9M0	MapMan:35.2	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G20290_001]

Coordinates

chr2:-:20153714..20154528

Molecular Weight (calculated)

20224.1 Da

IEP (calculated)

9.546

GRAVY (calculated)

-1.086

Length

173 amino acids

Sequence
(BLAST)

001: MQMQTHTSAP EQQHILRARN SVRSSHRDSP SEEERADEEA SRTALSSFRM KEEQIERKKI EVREKVFAQL GRVEEESKRL AVIRKELEAM ADPTSKQVSD
101: LRKKIDAVNS ELKPLGQNCL KKEKEYREAL EAFDGKNREK AQLVNKLMEL VSESEWQRMR KLEQLSKTID SLR

Best Arabidopsis Sequence Match ( AT3G09980.1 )
(BLAST)

001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH

Arabidopsis Description

Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.