Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028542.1-P | Field mustard | nucleus | 78.89 | 89.87 |
| CDX67549 | Canola | nucleus | 78.33 | 88.68 |
| CDY13331 | Canola | nucleus | 79.44 | 88.27 |
| Bra006959.1-P | Field mustard | nucleus | 77.78 | 84.85 |
| CDX78133 | Canola | nucleus | 77.78 | 84.85 |
| CDX73594 | Canola | nucleus | 77.78 | 84.34 |
| KRH67862 | Soybean | nucleus | 66.11 | 71.26 |
| KRG96151 | Soybean | nucleus | 65.0 | 70.06 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 68.89 | 69.66 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 65.0 | 68.82 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 73.89 | 68.21 |
| Solyc10g083520.1.1 | Tomato | plastid | 63.89 | 67.65 |
| PGSC0003DMT400007017 | Potato | nucleus | 61.11 | 66.27 |
| Solyc09g009210.2.1 | Tomato | nucleus | 61.11 | 66.27 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 60.0 | 65.06 |
| AT5G03660.1 | Thale cress | nucleus | 60.56 | 63.01 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 50.0 | 56.6 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 51.11 | 53.18 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 51.67 | 53.14 |
| Os04t0408600-01 | Rice | cytosol | 47.78 | 50.89 |
| AT2G27740.1 | Thale cress | nucleus | 48.89 | 50.57 |
| EES12098 | Sorghum | nucleus | 47.22 | 50.3 |
| Zm00001d025338_P001 | Maize | nucleus | 47.22 | 50.0 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 47.22 | 49.71 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 46.67 | 49.7 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 46.67 | 49.7 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 46.67 | 49.7 |
| Zm00001d016683_P001 | Maize | nucleus | 46.11 | 49.7 |
| Os02t0528100-01 | Rice | cytosol | 45.0 | 46.55 |
| EES06901 | Sorghum | nucleus | 46.11 | 46.11 |
| AT3G52900.1 | Thale cress | cytosol | 41.67 | 45.73 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 38.89 | 45.16 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824458 | UniProt:A0A178VHH0 | ProteinID:AEE79010.1 | ArrayExpress:AT3G52920 | EnsemblPlantsGene:AT3G52920 |
| RefSeq:AT3G52920 | TAIR:AT3G52920 | RefSeq:AT3G52920-TAIR-G | EnsemblPlants:AT3G52920.1 | TAIR:AT3G52920.1 | EMBL:AY088252 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | InterPro:GORAB |
| RefSeq:NP_566974.1 | ProteinID:OAP04981.1 | PFAM:PF04949 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 | UniProt:Q8L9S7 |
| UniParc:UPI00000A45B6 | SEG:seg | : | : | : | : |
Description
Transcriptional activator (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8L9S7]
Coordinates
chr3:+:19624278..19626347
Molecular Weight (calculated)
20985.2 Da
IEP (calculated)
7.084
GRAVY (calculated)
-1.036
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME MGQLVGESEK LRLKKLDELS RSIDTESESI SQDKTIPIKN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME MGQLVGESEK LRLKKLDELS RSIDTESESI SQDKTIPIKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.