Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70295 | Canola | nucleus | 87.86 | 87.86 |
| CDY10366 | Canola | nucleus | 87.86 | 87.86 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 75.72 | 73.6 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 78.61 | 67.33 |
| KRH67862 | Soybean | nucleus | 64.74 | 67.07 |
| KRG96151 | Soybean | nucleus | 64.16 | 66.47 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 61.27 | 63.86 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 62.43 | 63.53 |
| Solyc09g009210.2.1 | Tomato | nucleus | 60.69 | 63.25 |
| PGSC0003DMT400007017 | Potato | nucleus | 60.69 | 63.25 |
| Solyc10g083520.1.1 | Tomato | plastid | 61.85 | 62.94 |
| AT3G52920.1 | Thale cress | nucleus | 63.01 | 60.56 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 63.01 | 55.9 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 50.29 | 54.72 |
| Os04t0408600-01 | Rice | cytosol | 52.6 | 53.85 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 52.02 | 53.25 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 52.02 | 53.25 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 52.02 | 53.25 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 53.76 | 53.14 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.02 | 52.63 |
| EES12098 | Sorghum | nucleus | 50.87 | 52.07 |
| Zm00001d025338_P001 | Maize | nucleus | 50.87 | 51.76 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 50.87 | 50.87 |
| Zm00001d016683_P001 | Maize | nucleus | 48.55 | 50.3 |
| AT2G27740.1 | Thale cress | nucleus | 50.29 | 50.0 |
| AT3G52900.1 | Thale cress | cytosol | 43.35 | 45.73 |
| Os02t0528100-01 | Rice | cytosol | 45.66 | 45.4 |
| EES06901 | Sorghum | nucleus | 46.82 | 45.0 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 39.88 | 44.52 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831768 | UniProt:A0A178UAK5 | ProteinID:AED90638.1 | ArrayExpress:AT5G03660 | EnsemblPlantsGene:AT5G03660 |
| RefSeq:AT5G03660 | TAIR:AT5G03660 | RefSeq:AT5G03660-TAIR-G | EnsemblPlants:AT5G03660.1 | TAIR:AT5G03660.1 | EMBL:AY054234 |
| EMBL:AY072382 | EMBL:AY088699 | EMBL:AY114621 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0016020 | InterPro:GORAB |
| RefSeq:NP_568126.1 | ProteinID:OAO90988.1 | PFAM:PF04949 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 | UniProt:Q940P0 |
| UniParc:UPI000004B2BA | SEG:seg | : | : | : | : |
Description
AT5g03660/F17C15_80 [Source:UniProtKB/TrEMBL;Acc:Q940P0]
Coordinates
chr5:+:937819..940115
Molecular Weight (calculated)
20187.2 Da
IEP (calculated)
5.327
GRAVY (calculated)
-1.130
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPTETSQPA PSDQGRRLKD QLSESMSFSS QMKKEDDELS MKALSAFKAK EEEIEKKKME IRERVQAQLG RVEDESKRLA MIREELEGFA DPMRKEVTMV
101: RKKIDSLDKE LKPLGNTVQK KETEYKDALE AFNEKNKEKV ELITKLQELE GESEKFRFKK LEELSKNIDL TKP
101: RKKIDSLDKE LKPLGNTVQK KETEYKDALE AFNEKNKEKV ELITKLQELE GESEKFRFKK LEELSKNIDL TKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.