Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12098 | Sorghum | nucleus | 92.35 | 92.9 |
| Os04t0408600-01 | Rice | cytosol | 85.88 | 86.39 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 85.29 | 85.8 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 85.29 | 85.8 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 85.29 | 85.8 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 84.71 | 84.21 |
| Zm00001d016683_P001 | Maize | nucleus | 67.65 | 68.86 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 65.29 | 63.43 |
| CDY69705 | Canola | cytosol | 8.82 | 62.5 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 56.47 | 60.38 |
| KRG96151 | Soybean | nucleus | 58.24 | 59.28 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 59.41 | 58.72 |
| KRH67862 | Soybean | nucleus | 57.65 | 58.68 |
| CDY27436 | Canola | cytosol | 35.88 | 58.65 |
| Bra017239.1-P | Field mustard | cytosol | 44.71 | 58.46 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 55.88 | 57.23 |
| KRH30497 | Soybean | plastid | 58.82 | 57.14 |
| KRH25180 | Soybean | plastid | 58.82 | 56.82 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 57.65 | 56.65 |
| Solyc09g009210.2.1 | Tomato | nucleus | 54.71 | 56.02 |
| Bra028542.1-P | Field mustard | nucleus | 51.76 | 55.7 |
| PGSC0003DMT400007017 | Potato | nucleus | 54.12 | 55.42 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 55.29 | 55.29 |
| CDX67549 | Canola | nucleus | 51.18 | 54.72 |
| Solyc10g083520.1.1 | Tomato | plastid | 54.71 | 54.71 |
| CDY13331 | Canola | nucleus | 51.76 | 54.32 |
| CDY66899 | Canola | nucleus | 54.71 | 54.07 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 55.88 | 53.37 |
| Bra012002.1-P | Field mustard | nucleus | 50.59 | 52.76 |
| Solyc11g066970.1.1 | Tomato | nucleus | 52.94 | 52.33 |
| CDY60156 | Canola | cytosol, plastid | 54.71 | 52.25 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 54.71 | 52.25 |
| CDX73594 | Canola | nucleus | 50.59 | 51.81 |
| Bra001292.1-P | Field mustard | nucleus | 54.71 | 51.67 |
| Bra006959.1-P | Field mustard | nucleus | 50.0 | 51.52 |
| CDX78133 | Canola | nucleus | 50.0 | 51.52 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 51.18 | 51.48 |
| CDX71428 | Canola | cytosol | 51.18 | 51.48 |
| PGSC0003DMT400068276 | Potato | nucleus | 52.35 | 51.45 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 52.35 | 51.15 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 52.35 | 51.15 |
| CDX74002 | Canola | nucleus | 54.12 | 51.11 |
| AT5G03660.1 | Thale cress | nucleus | 51.76 | 50.87 |
| CDY00898 | Canola | cytosol, plastid | 52.94 | 50.56 |
| KRG92044 | Soybean | nucleus | 50.0 | 50.3 |
| CDX70295 | Canola | nucleus | 51.18 | 50.29 |
| CDY10366 | Canola | nucleus | 51.18 | 50.29 |
| KRH34738 | Soybean | cytosol | 50.0 | 49.42 |
| CDX67543 | Canola | cytosol, plastid | 47.65 | 49.09 |
| CDY13335 | Canola | cytosol | 47.65 | 49.09 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 47.65 | 49.09 |
| AT2G27740.1 | Thale cress | nucleus | 50.0 | 48.85 |
| CDY17934 | Canola | cytosol | 42.94 | 48.67 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 49.41 | 47.73 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 49.41 | 47.73 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 49.41 | 47.73 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 49.41 | 47.73 |
| AT3G52900.1 | Thale cress | cytosol | 45.88 | 47.56 |
| AT3G52920.1 | Thale cress | nucleus | 50.0 | 47.22 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 42.94 | 47.1 |
| Solyc11g007330.1.1 | Tomato | nucleus | 45.29 | 46.95 |
| CDY43720 | Canola | nucleus | 48.24 | 46.86 |
| PGSC0003DMT400050208 | Potato | cytosol | 44.71 | 46.63 |
| CDY32440 | Canola | cytosol | 42.35 | 46.15 |
| CDY25859 | Canola | cytosol | 42.35 | 46.15 |
| CDY70153 | Canola | nucleus, plastid | 47.06 | 45.71 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 50.59 | 44.56 |
| Bra017238.1-P | Field mustard | plastid | 49.41 | 44.21 |
| CDY43719 | Canola | plastid | 49.41 | 43.98 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 50.0 | 43.59 |
| CDX79678 | Canola | cytosol | 38.24 | 42.48 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 45.88 | 38.61 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 17.06 | 32.95 |
| Bra023068.1-P | Field mustard | nucleus | 51.18 | 30.31 |
| CDY71050 | Canola | cytosol | 36.47 | 21.31 |
| Bra027585.1-P | Field mustard | plastid | 38.82 | 14.32 |
Protein Annotations
| EMBL:BT042945 | EMBL:EU966448 | EnsemblPlants:Zm00001d025338_P001 | EnsemblPlants:Zm00001d025338_T001 | EnsemblPlantsGene:Zm00001d025338 | EntrezGene:100277048 |
| InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF6 | PFAM:PF04949 | ProteinID:AQK43544.1 |
| SEG:seg | UniParc:UPI0000E64AAB | UniProt:B4G0Q7 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr10:-:114698888..114700369
Molecular Weight (calculated)
19494.5 Da
IEP (calculated)
9.404
GRAVY (calculated)
-0.878
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGGGGVDQP PMQMVLRVRH PSSLGGSGAD EDDGEGSSRS ALSVFKAKEE QIERRKMEVR EKVFAHLGRV EEESKRLAFI RQELEGMADP TRKEVESIRK
101: RIDTVNRQLK PLSKSCVKKE KEYKEVLEAY NEKSKEKALL VNRLIELVSE SERMRMKKLE ELNKTVDSLY
101: RIDTVNRQLK PLSKSCVKKE KEYKEVLEAY NEKSKEKALL VNRLIELVSE SERMRMKKLE ELNKTVDSLY
001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRL KKLDELSRSI DTESESISQD KTIPIKN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRL KKLDELSRSI DTESESISQD KTIPIKN
Arabidopsis Description
Transcriptional activator (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8L9S7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.