Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G035960.19 | |
| HORVU2Hr1G072420.11 | |
| HORVU6Hr1G075950.4 | |
| HORVU7Hr1G038420.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G292600.1 | Wheat | nucleus | 97.63 | 97.63 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 97.63 | 97.63 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 94.67 | 93.57 |
| EES12098 | Sorghum | nucleus | 88.17 | 88.17 |
| Zm00001d025338_P001 | Maize | nucleus | 85.8 | 85.29 |
| Os04t0408600-01 | Rice | cytosol | 84.02 | 84.02 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 66.27 | 64.0 |
| CDY69705 | Canola | cytosol | 8.88 | 62.5 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 57.4 | 61.01 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 57.99 | 59.04 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 59.17 | 58.14 |
| KRG96151 | Soybean | nucleus | 57.4 | 58.08 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 59.17 | 57.8 |
| KRH67862 | Soybean | nucleus | 56.8 | 57.48 |
| CDY27436 | Canola | cytosol | 34.91 | 56.73 |
| Solyc09g009210.2.1 | Tomato | nucleus | 55.62 | 56.63 |
| Bra017239.1-P | Field mustard | cytosol | 43.2 | 56.15 |
| PGSC0003DMT400007017 | Potato | nucleus | 55.03 | 56.02 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 55.62 | 55.29 |
| KRH30497 | Soybean | plastid | 56.8 | 54.86 |
| Solyc10g083520.1.1 | Tomato | plastid | 55.03 | 54.71 |
| CDY66899 | Canola | nucleus | 55.62 | 54.65 |
| KRH25180 | Soybean | plastid | 56.8 | 54.55 |
| Bra028542.1-P | Field mustard | nucleus | 50.89 | 54.43 |
| CDX67549 | Canola | nucleus | 50.89 | 54.09 |
| CDY13331 | Canola | nucleus | 51.48 | 53.7 |
| Solyc11g066970.1.1 | Tomato | nucleus | 54.44 | 53.49 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 55.62 | 52.81 |
| PGSC0003DMT400068276 | Potato | nucleus | 53.85 | 52.6 |
| Bra001292.1-P | Field mustard | nucleus | 55.62 | 52.22 |
| AT5G03660.1 | Thale cress | nucleus | 53.25 | 52.02 |
| CDY60156 | Canola | cytosol, plastid | 54.44 | 51.69 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 54.44 | 51.69 |
| CDX74002 | Canola | nucleus | 55.03 | 51.67 |
| Bra012002.1-P | Field mustard | nucleus | 49.7 | 51.53 |
| KRG92044 | Soybean | nucleus | 50.89 | 50.89 |
| CDY10366 | Canola | nucleus | 52.07 | 50.87 |
| CDX70295 | Canola | nucleus | 52.07 | 50.87 |
| CDX71428 | Canola | cytosol | 50.3 | 50.3 |
| CDY00898 | Canola | cytosol, plastid | 52.66 | 50.0 |
| KRH34738 | Soybean | cytosol | 50.89 | 50.0 |
| CDX73594 | Canola | nucleus | 49.11 | 50.0 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 49.7 | 49.7 |
| Bra006959.1-P | Field mustard | nucleus | 48.52 | 49.7 |
| CDX78133 | Canola | nucleus | 48.52 | 49.7 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 50.89 | 49.43 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 50.89 | 49.43 |
| AT2G27740.1 | Thale cress | nucleus | 50.3 | 48.85 |
| CDY17934 | Canola | cytosol | 42.6 | 48.0 |
| CDX67543 | Canola | cytosol, plastid | 46.75 | 47.88 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 46.75 | 47.88 |
| CDY13335 | Canola | cytosol | 46.75 | 47.88 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 43.2 | 47.1 |
| AT3G52920.1 | Thale cress | nucleus | 49.7 | 46.67 |
| PGSC0003DMT400050208 | Potato | cytosol | 44.97 | 46.63 |
| AT3G52900.1 | Thale cress | cytosol | 44.97 | 46.34 |
| CDY32440 | Canola | cytosol | 42.6 | 46.15 |
| CDY25859 | Canola | cytosol | 42.6 | 46.15 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 47.93 | 46.02 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 47.93 | 46.02 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 47.93 | 46.02 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 47.93 | 46.02 |
| Solyc11g007330.1.1 | Tomato | nucleus | 43.79 | 45.12 |
| CDY70153 | Canola | nucleus, plastid | 46.15 | 44.57 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 50.3 | 44.04 |
| Bra017238.1-P | Field mustard | plastid | 49.11 | 43.68 |
| CDY43719 | Canola | plastid | 49.11 | 43.46 |
| CDY43720 | Canola | nucleus | 44.97 | 43.43 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 49.7 | 43.08 |
| CDX79678 | Canola | cytosol | 38.46 | 42.48 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 46.75 | 39.11 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 17.16 | 32.95 |
| Bra023068.1-P | Field mustard | nucleus | 50.3 | 29.62 |
| CDY71050 | Canola | cytosol | 35.5 | 20.62 |
| Bra027585.1-P | Field mustard | plastid | 38.46 | 14.1 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G072420.11 | EnsemblPlantsGene:HORVU2Hr1G072420 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF6 |
| PFAM:PF04949 | SEG:seg | UniParc:UPI000296C75B | UniProt:M0YAX6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr2H:+:519528221..519529717
Molecular Weight (calculated)
19505.5 Da
IEP (calculated)
8.996
GRAVY (calculated)
-0.872
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGEVEQQAP MQMVLRVKHP SSLSSGSDEA AEGEGSSRSA LSVFKAKEEQ IERKKMEVRD KVFAQLGRVE EESKRLAFIR QELEGMADPT RKEVESIQRR
101: IDTVNRQLKP LSKSCVKKEK EYKEVLEAYN EKSKEKGILV NRLIELVSES ERMRMKKLEE LNKTVDSLY
101: IDTVNRQLKP LSKSCVKKEK EYKEVLEAYN EKSKEKGILV NRLIELVSES ERMRMKKLEE LNKTVDSLY
001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH
Arabidopsis Description
Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.