Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 100.0 | 100.0 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 86.93 | 86.93 |
| CDY69705 | Canola | cytosol | 10.23 | 75.0 |
| CDY43720 | Canola | nucleus | 73.3 | 73.71 |
| CDY27436 | Canola | cytosol | 42.61 | 72.12 |
| CDX67549 | Canola | nucleus | 61.36 | 67.92 |
| CDY13331 | Canola | nucleus | 61.93 | 67.28 |
| CDX78133 | Canola | nucleus | 60.8 | 64.85 |
| CDX73594 | Canola | nucleus | 60.8 | 64.46 |
| CDY60156 | Canola | cytosol, plastid | 62.5 | 61.8 |
| KRH67862 | Soybean | nucleus | 58.52 | 61.68 |
| CDY66899 | Canola | nucleus | 59.66 | 61.05 |
| CDY17934 | Canola | cytosol | 51.7 | 60.67 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 58.52 | 60.59 |
| KRG96151 | Soybean | nucleus | 57.39 | 60.48 |
| CDY00898 | Canola | cytosol, plastid | 60.8 | 60.11 |
| Solyc10g083520.1.1 | Tomato | plastid | 57.95 | 60.0 |
| CDY10366 | Canola | nucleus | 58.52 | 59.54 |
| CDX70295 | Canola | nucleus | 58.52 | 59.54 |
| CDY25859 | Canola | cytosol | 52.27 | 58.97 |
| CDY32440 | Canola | cytosol | 52.27 | 58.97 |
| CDX74002 | Canola | nucleus | 60.23 | 58.89 |
| CDY70153 | Canola | nucleus, plastid | 57.39 | 57.71 |
| Solyc09g009210.2.1 | Tomato | nucleus | 53.98 | 57.23 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 53.98 | 57.23 |
| PGSC0003DMT400007017 | Potato | nucleus | 53.98 | 57.23 |
| CDY43719 | Canola | plastid | 61.36 | 56.54 |
| CDX79678 | Canola | cytosol | 46.59 | 53.59 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 47.16 | 52.2 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 49.43 | 49.71 |
| EES12098 | Sorghum | nucleus | 47.73 | 49.7 |
| Zm00001d025338_P001 | Maize | nucleus | 47.73 | 49.41 |
| CDX71428 | Canola | cytosol | 46.59 | 48.52 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 46.59 | 48.52 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 47.73 | 48.28 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.59 | 47.95 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 46.02 | 47.93 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 46.02 | 47.93 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 46.02 | 47.93 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 46.59 | 47.4 |
| Os04t0408600-01 | Rice | cytosol | 45.45 | 47.34 |
| Zm00001d016683_P001 | Maize | nucleus | 44.89 | 47.31 |
| Os02t0528100-01 | Rice | cytosol | 44.32 | 44.83 |
| CDX67543 | Canola | cytosol, plastid | 40.91 | 43.64 |
| CDY13335 | Canola | cytosol | 40.91 | 43.64 |
| EES06901 | Sorghum | nucleus | 44.32 | 43.33 |
| CDY71050 | Canola | cytosol | 39.2 | 23.71 |
Protein Annotations
| EnsemblPlants:CDX79677 | EnsemblPlantsGene:GSBRNA2T00132476001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | ProteinID:CDX79677 | ProteinID:CDX79677.1 | ProteinID:CDY57618.1 | SEG:seg | UniParc:UPI0004EEEC16 |
| UniProt:A0A078CSF0 | MapMan:35.2 | : | : | : | : |
Description
BnaC03g20130DBnaC03g20130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CSF0]
Coordinates
chrLK031818:+:1522279..1523231
Molecular Weight (calculated)
20364.4 Da
IEP (calculated)
5.270
GRAVY (calculated)
-0.785
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSNAGDGV GATGMAEAPL NNEMMFHRSM STSSCLFTED EDMTRTALSE FKAKESEIER RKMEIRERVQ AQLDRVEEET RRLATIREEL ESLADPTRKE
101: VLMIRKKIDS VYKELRPLSY SVQKKQREYK EAVDAFNEKN LEKIQLITKL MEEIGQLAGE SENLRLKKLE DLSKSI
101: VLMIRKKIDS VYKELRPLSY SVQKKQREYK EAVDAFNEKN LEKIQLITKL MEEIGQLAGE SENLRLKKLE DLSKSI
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.