CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00898
CDY17934
CDY25859
CDY27436
CDY32440
CDY34693
CDY37538
CDY43274
CDY55806
CDY60156
CDY70153
CDY71050

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09980.1	CDY34693	AT3G01180.1	21798944
AT3G09980.1	CDY37538	AT3G01180.1	21798944
AT3G09980.1	CDY43274	AT3G01180.1	21798944
AT3G09980.1	CDY55806	AT3G01180.1	21798944
AT3G09980.1	CDY00898	AT3G09980.1	21798944
AT3G09980.1	CDY17934	AT3G09980.1	21798944
AT3G09980.1	CDY25859	AT3G09980.1	21798944
AT3G09980.1	CDY27436	AT3G09980.1	21798944
AT3G09980.1	CDY32440	AT3G09980.1	21798944
AT3G09980.1	CDY60156	AT3G09980.1	21798944
AT3G09980.1	CDY70153	AT3G09980.1	21798944
AT3G09980.1	CDY71050	AT3G09980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60156	Canola	cytosol, plastid	88.57	87.08
CDY27436	Canola	cytosol	51.43	86.54
AT3G09980.1	Thale cress	nucleus, plastid	85.71	84.27
CDY00898	Canola	cytosol, plastid	84.0	82.58
CDY66899	Canola	nucleus	76.57	77.91
CDY32440	Canola	cytosol	66.86	75.0
CDY25859	Canola	cytosol	66.86	75.0
CDY17934	Canola	cytosol	63.43	74.0
CDX67549	Canola	nucleus	66.86	73.58
CDX74002	Canola	nucleus	75.43	73.33
CDY13331	Canola	nucleus	66.86	72.22
KRH67862	Soybean	nucleus	65.71	68.86
CDX73594	Canola	nucleus	65.14	68.67
KRG96151	Soybean	nucleus	65.14	68.26
CDX78133	Canola	nucleus	64.0	67.88
CDX70295	Canola	nucleus	65.14	65.9
CDY10366	Canola	nucleus	65.14	65.9
PGSC0003DMT400007017	Potato	nucleus	59.43	62.65
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	60.57	62.35
VIT_08s0007g03770.t01	Wine grape	nucleus	58.86	62.05
Solyc09g009210.2.1	Tomato	nucleus	58.86	62.05
Solyc10g083520.1.1	Tomato	plastid	60.0	61.76
CDY43720	Canola	nucleus	60.57	60.57
CDX79677	Canola	cytosol, mitochondrion, nucleus	57.71	57.39
CDY57618	Canola	cytosol, mitochondrion, nucleus	57.71	57.39
CDY43719	Canola	plastid	62.29	57.07
CDX84559	Canola	cytosol, nucleus, plastid	56.57	56.25
GSMUA_Achr8P16080_001	Banana	nucleus	53.71	53.71
CDX79678	Canola	cytosol	46.29	52.94
GSMUA_Achr3P18940_001	Banana	nucleus	46.29	50.94
GSMUA_Achr2P20290_001	Banana	nucleus	49.71	50.29
CDX71428	Canola	cytosol	46.29	47.93
CDY04510	Canola	cytosol, nucleus, plastid	46.29	47.93
Zm00001d016683_P001	Maize	nucleus	45.71	47.9
Os04t0408600-01	Rice	cytosol	45.71	47.34
CDY30533	Canola	cytosol, mitochondrion, nucleus, plastid	46.86	47.13
Zm00001d025338_P001	Maize	nucleus	45.71	47.06
HORVU2Hr1G072420.11	Barley	nucleus	44.57	46.15
EES12098	Sorghum	nucleus	44.57	46.15
TraesCS2A01G292600.1	Wheat	nucleus	44.57	46.15
TraesCS2D01G290400.1	Wheat	nucleus	44.57	46.15
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	44.57	45.61
Os02t0528100-01	Rice	cytosol	44.57	44.83
CDY13335	Canola	cytosol	40.57	43.03
CDX67543	Canola	cytosol, plastid	40.57	43.03
EES06901	Sorghum	nucleus	44.0	42.78
CDY71050	Canola	cytosol	48.0	28.87
CDY69705	Canola	cytosol	3.43	25.0

Protein Annotations

EnsemblPlants:CDY70153	EnsemblPlantsGene:GSBRNA2T00096804001	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470	PANTHER:PTHR21470:SF4
PFAM:PF04949	ProteinID:CDY70153	ProteinID:CDY70153.1	SEG:seg	UniParc:UPI0004EDB384	UniProt:A0A078JRE4
MapMan:35.2	:	:	:	:	:

Description

BnaC05g50700DBnaC05g50700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRE4]

Coordinates

chrLK041306:+:614..1618

Molecular Weight (calculated)

20055.4 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.587

Length

175 amino acids

Sequence
(BLAST)

001: MKEMQAIETS QPTVAPPAVH SRQLGAQLSG SMSFSSQMTK EDEEMSRTAL SAFRAKEEEI EKNKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVALVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT KLMELSQLIL KSFFLLSNIV IGARV

Best Arabidopsis Sequence Match ( AT3G09980.1 )
(BLAST)

001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH

Arabidopsis Description

Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.