Factsheet for VIT_07s0141g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00340.t01
VIT_05s0077g00530.t01
VIT_06s0080g00930.t01
VIT_08s0007g03770.t01
VIT_13s0067g02900.t01
VIT_15s0046g00260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	VIT_01s0010g00340.t01	AT1G30860.1	21798944
AT2G30580.1	VIT_13s0067g02900.t01	AT2G40620.1	21798944
AT2G30580.1	VIT_15s0046g00260.t01	AT2G46550.1	21798944
AT2G30580.1	VIT_08s0007g03770.t01	AT3G09980.1	21798944
AT2G30580.1	VIT_05s0077g00530.t01	AT4G13540.1	21798944
AT2G30580.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038984	Potato	nucleus	69.3	69.3
Solyc06g084040.2.1	Tomato	nucleus	68.84	68.68
KRG95629	Soybean	nucleus	67.44	67.76
Solyc09g065990.2.1	Tomato	nucleus	67.67	67.67
Solyc06g008600.2.1	Tomato	nucleus	64.42	66.27
KRH67309	Soybean	nucleus	66.98	64.72
PGSC0003DMT400051660	Potato	nucleus	67.67	64.38
Bra022807.1-P	Field mustard	cytosol	10.47	64.29
PGSC0003DMT400013629	Potato	nucleus	43.02	63.14
VIT_14s0081g00070.t01	Wine grape	nucleus	63.26	60.58
KRH32110	Soybean	nucleus	60.0	60.14
KRH71326	Soybean	mitochondrion, nucleus	58.37	58.24
AT2G30580.1	Thale cress	nucleus	55.58	56.9
CDY47131	Canola	nucleus	55.12	56.83
AT1G06770.1	Thale cress	nucleus	55.35	56.53
CDY10748	Canola	nucleus	54.42	55.58
CDX97807	Canola	nucleus	53.26	55.05
CDY29659	Canola	nucleus	53.72	54.87
Bra018304.1-P	Field mustard	nucleus	53.72	53.47
GSMUA_Achr9P10710_001	Banana	nucleus	49.3	53.27
Bra021651.1-P	Field mustard	nucleus	42.33	51.7
VIT_05s0020g04730.t01	Wine grape	nucleus	56.74	51.48
Os03t0741700-00	Rice	cytosol	21.63	48.44
GSMUA_Achr5P03230_001	Banana	nucleus	49.53	48.41
CDY23989	Canola	nucleus	48.14	48.25
GSMUA_Achr4P17750_001	Banana	nucleus	42.79	47.3
Os12t0600200-03	Rice	cytosol, nucleus	33.49	41.86
Os03t0632800-01	Rice	nucleus	40.47	40.28
TraesCS5D01G388500.1	Wheat	nucleus	48.6	40.19
TraesCS5A01G378600.1	Wheat	nucleus	47.44	40.16
HORVU5Hr1G093720.3	Barley	nucleus	48.37	39.92
KXG37982	Sorghum	nucleus	47.21	39.34
TraesCS5B01G382100.1	Wheat	nucleus	46.74	38.95
Zm00001d033322_P001	Maize	nucleus	47.44	38.78
Zm00001d030985_P001	Maize	nucleus	42.79	38.66
CDY06664	Canola	nucleus	34.42	38.64
Bra015526.1-P	Field mustard	nucleus	21.86	38.37
Zm00001d041405_P001	Maize	nucleus	43.02	38.07
TraesCS5D01G069800.1	Wheat	nucleus	41.4	37.71
TraesCS5A01G058000.1	Wheat	nucleus	41.16	37.5
HORVU5Hr1G014430.6	Barley	nucleus	40.7	36.92
TraesCS5B01G065600.1	Wheat	cytosol	40.47	36.86
TraesCS5A01G381800.1	Wheat	mitochondrion	30.47	34.93
TraesCS5D01G391100.1	Wheat	mitochondrion	30.47	34.93
TraesCS5B01G385300.1	Wheat	mitochondrion	32.33	34.75
Bra015525.1-P	Field mustard	cytosol	33.26	34.13
OQU79520	Sorghum	nucleus	40.7	31.7
KXG37592	Sorghum	mitochondrion, nucleus	35.58	31.35
Zm00001d033967_P001	Maize	nucleus	27.21	30.63
HORVU5Hr1G094160.2	Barley	plastid	31.4	30.47
Zm00001d013303_P001	Maize	nucleus	27.44	30.33

Protein Annotations

EntrezGene:100264728	wikigene:100264728	MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	ProteinID:CBI17948	ProteinID:CBI17948.3
UniProt:D7SQL7	EMBL:FN594965	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100264728	wikigene:LOC100264728
PFAM:PF13923	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	SMART:SM00184
SUPFAM:SSF57850	TIGR:TC55327	UniParc:UPI00015CAABC	ArrayExpress:VIT_07s0141g00610	EnsemblPlantsGene:VIT_07s0141g00610	EnsemblPlants:VIT_07s0141g00610.t01
unigene:Vvi.1561	RefSeq:XP_002275598	RefSeq:XP_002275598.1	RefSeq:XP_010651942.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:344455..357948

Molecular Weight (calculated)

47995.0 Da

IEP (calculated)

10.248

GRAVY (calculated)

-0.473

Length

430 amino acids

Sequence
(BLAST)

001: MSNQVVKVRR ETIAACMTCP LCNKLLRDAT TISECLHTFC RKCIYNKISD EELECCPICN TDLGCVPLEK LRPDHNLQDV RAKIFPFKRR KVKAPEVVLP
101: VTLPVKRKER SLSSLVVSTP RVSTQTTMTG RRTKSVARKA TALRGSGFSI EKLIKKEEDS VGERPASSSS PETLNKFTQN IRQNSPSAEP SIHSTPNKET
201: ENGAESWEGK FDLWKPLNCL VEVANRTKSL KFNSQGSAVK SEPMHVPDGE SQVRKTKVKE HGRKSKVQDE KISTTPVSAE SVKPKKLCRV RRRRAAAFGE
301: LGISPQAVLN AVNNHKRRTG SIWFSLVASE DQEGDASLPQ ISSNFLRIKD VNVPVSFIQK YLMRKLDLTS ETEVEIKCMG QPVLPTLQLH NLVDLWLQTA
401: STSQRVPASI GSSGKEFVMV LAYARRLLDP

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.