Factsheet for GSMUA_Achr2P03580_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P17750_001
GSMUA_Achr5P03230_001
GSMUA_Achr6P36120_001
GSMUA_Achr9P10710_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	GSMUA_Achr4P17750_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr5P03230_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr9P10710_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr6P36120_001	AT3G48040.1	21798944
AT4G38430.1	GSMUA_Achr6P36120_001	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	66.27	64.86
TraesCS5A01G340900.1	Wheat	cytosol	57.59	61.09
TraesCS5B01G339200.1	Wheat	cytosol	57.99	60.87
GSMUA_Achr3P14650_001	Banana	nucleus	67.65	60.39
TraesCS5D01G346100.1	Wheat	cytosol	57.59	60.33
GSMUA_Achr1P18140_001	Banana	nucleus	64.69	59.31
EER99291	Sorghum	nucleus, plastid	63.51	57.6
Zm00001d006269_P001	Maize	cytosol	43.59	57.55
Os09t0544800-01	Rice	nucleus	62.92	56.86
HORVU5Hr1G085510.1	Barley	nucleus, plastid	62.72	56.18
Solyc04g082110.2.1	Tomato	nucleus	49.9	56.1
VIT_03s0038g03620.t01	Wine grape	cytosol	64.5	55.71
PGSC0003DMT400047997	Potato	nucleus	63.12	55.46
Solyc01g111930.2.1	Tomato	nucleus	62.72	55.11
Zm00001d021464_P002	Maize	nucleus, plastid	62.52	54.94
AT4G38430.1	Thale cress	nucleus	59.17	54.74
KRH29101	Soybean	cytosol, plastid	60.55	54.24
KRH24128	Soybean	cytosol	60.75	54.23
VIT_18s0001g00550.t01	Wine grape	cytosol	56.21	53.57
Bra015010.1-P	Field mustard	cytosol	57.79	53.56
CDX77457	Canola	cytosol	57.79	53.56
CDX85176	Canola	cytosol	57.59	53.38
PGSC0003DMT400025800	Potato	nucleus	55.62	51.37
GSMUA_Achr9P03750_001	Banana	cytosol	46.35	50.43
GSMUA_Achr2P09130_001	Banana	cytosol	35.9	46.55
GSMUA_Achr5P20570_001	Banana	nucleus	43.59	45.85
GSMUA_Achr5P06900_001	Banana	cytosol	37.67	45.37
GSMUA_Achr6P14020_001	Banana	cytosol	38.26	45.01
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.31	41.53
GSMUA_Achr3P03410_001	Banana	nucleus	39.45	39.53
GSMUA_Achr8P14480_001	Banana	nucleus	19.53	38.22
GSMUA_Achr3P15410_001	Banana	nucleus	37.28	38.1
GSMUA_Achr11P...	Banana	cytosol	22.49	34.13
GSMUA_Achr8P14490_001	Banana	cytosol	12.82	33.85
GSMUA_Achr11P...	Banana	cytosol	7.69	21.43
GSMUA_Achr6P14950_001	Banana	mitochondrion	44.38	16.94

Protein Annotations

EnsemblPlants:GSMUA_Achr2P03580_001	EnsemblPlants:GSMUA_Achr2T03580_001	EnsemblPlantsGene:GSMUA_Achr2G03580_001	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	PFAM:PF03759
PFscan:PS51334	SEG:seg	UniParc:UPI000295FC0F	UniProt:M0S4U9	MapMan:27.4.3.1	:

Description

Rop guanine nucleotide exchange factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G03580_001]

Coordinates

chr2:-:9244686..9250195

Molecular Weight (calculated)

56343.0 Da

IEP (calculated)

4.950

GRAVY (calculated)

-0.290

Length

507 amino acids

Sequence
(BLAST)

001: MGSVSSEEAE EEYASDQPND GGGSHSHSPS AKVPGSDSSI DLSGRRFPVA GVPLHPGGDV LFWEANVEER ATDFSEVEMM KERFAKLLLG EDMSGGAKGV
101: CTALAISNAI TNLSAAVFGE LWRLEPLAPQ KKTMWRREMD WLLSVSDYIV ELVPSIQELP GGRSFEVMVS CHRTDLQMNL PALKKLDAML LGMLDGFCNT
201: EFWYVDRGFL VTDADEDASK TCPSSSFRRA SSRQEEKWWL PCPGVPPTGL SEEARKRLQL SRDCANQILK AAMAINSAVL SEMETPDVYF ETLPKYGKTC
301: LGDIIYRYIT ADSFSPECLL DCLELSSEHH ILEIANRIEA AIHVWRLKGQ SKQSQSKAKN SWSGKFIGLV GDTERFLFLA ERGEGLLQSL RLRYPALPQT
401: ILDMNKIQYN KDVGQSILES YSRVMESLAF NIVARIDDLI FVDDATKNYD HQHASRNTVE PPTMAPSPPR GTLSSPAPAP PWHCLRDAHW PISLACLQHL
501: PLSEQTI

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.