Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12410.1 | CDY01754 | AT1G69690.1 | 21798944 |
| AT1G12410.1 | CDY28576 | AT1G69690.1 | 21798944 |
| AT1G12410.1 | CDY28577 | AT1G69690.1 | 21798944 |
| AT1G12410.1 | CDY68276 | AT1G69690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019764.1-P | Field mustard | plastid | 98.57 | 98.57 |
| CDX98066 | Canola | plastid | 97.85 | 97.85 |
| CDY26563 | Canola | plastid | 94.98 | 95.32 |
| AT1G12410.1 | Thale cress | plastid | 93.55 | 93.55 |
| CDY68541 | Canola | cytosol | 37.28 | 83.2 |
| VIT_02s0025g05140.t01 | Wine grape | plastid | 69.18 | 66.32 |
| Solyc08g079620.2.1 | Tomato | plastid | 67.38 | 65.05 |
| PGSC0003DMT400010090 | Potato | cytosol, plastid | 67.03 | 64.71 |
| GSMUA_Achr1P08260_001 | Banana | plastid | 65.95 | 64.11 |
| CDY69283 | Canola | plastid | 47.67 | 63.33 |
| KRH57313 | Soybean | endoplasmic reticulum, extracellular | 70.25 | 62.82 |
| KRH04045 | Soybean | mitochondrion | 69.89 | 56.85 |
| KXG19238 | Sorghum | plastid | 58.42 | 55.82 |
| CDY15997 | Canola | plastid | 94.98 | 54.3 |
| Os06t0136800-01 | Rice | plastid | 57.71 | 54.21 |
| TraesCS7D01G072100.1 | Wheat | plastid | 56.99 | 53.36 |
| TraesCS7A01G076400.1 | Wheat | plastid | 56.99 | 53.0 |
| Zm00001d045430_P002 | Maize | plastid | 58.42 | 50.31 |
| HORVU7Hr1G017670.1 | Barley | plastid | 57.35 | 49.69 |
| TraesCS4A01G374600.2 | Wheat | plastid | 55.91 | 49.37 |
| CDX69964 | Canola | plastid | 19.71 | 36.67 |
| CDY71709 | Canola | endoplasmic reticulum, extracellular | 23.3 | 34.03 |
| CDY21523 | Canola | mitochondrion | 28.32 | 33.19 |
| CDY61915 | Canola | mitochondrion | 27.6 | 32.63 |
| CDY51306 | Canola | plastid | 30.47 | 30.69 |
| CDY02210 | Canola | mitochondrion | 25.81 | 30.64 |
| CDX89962 | Canola | plastid | 31.54 | 29.93 |
| CDY71339 | Canola | endoplasmic reticulum | 13.62 | 29.69 |
| CDY15250 | Canola | plastid | 31.54 | 28.76 |
| CDY15433 | Canola | plastid | 31.18 | 28.62 |
| CDY34832 | Canola | plastid | 26.52 | 27.11 |
| CDY21009 | Canola | plastid | 26.16 | 27.04 |
| CDY31211 | Canola | plastid | 26.16 | 27.04 |
| CDY39425 | Canola | plastid | 26.88 | 26.04 |
| CDY38981 | Canola | plastid | 26.88 | 25.77 |
| CDY35605 | Canola | plastid | 26.16 | 24.09 |
| CDY09652 | Canola | plastid | 26.16 | 24.01 |
| CDY42955 | Canola | plastid | 26.16 | 23.93 |
| CDY09656 | Canola | plastid | 26.16 | 23.86 |
| CDX90492 | Canola | plastid | 26.16 | 23.78 |
| CDY34630 | Canola | plastid | 15.05 | 23.6 |
| CDX96137 | Canola | plastid | 25.45 | 22.68 |
| CDY36212 | Canola | plastid | 25.09 | 22.36 |
| CDY31112 | Canola | plastid | 25.09 | 21.67 |
| CDY32150 | Canola | plastid | 24.73 | 21.23 |
| CDX95009 | Canola | plastid | 23.3 | 21.17 |
| CDY43468 | Canola | plastid | 13.26 | 21.02 |
| CDY59367 | Canola | plastid | 26.16 | 18.81 |
| CDY03582 | Canola | plastid | 25.81 | 18.51 |
| CDY46278 | Canola | cytosol | 14.34 | 17.7 |
Protein Annotations
| MapMan:19.4.2.8.1 | Gene3D:3.90.226.10 | GO:A0A078GZS0 | UniProt:A0A078GZS0 | EnsemblPlants:CDY30078 | ProteinID:CDY30078 |
| ProteinID:CDY30078.1 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004252 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00044632001 | HAMAP:MF_00444 | PFAM:PF00574 | PRINTS:PR00127 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF15 |
| SUPFAM:SSF52096 | UniParc:UPI0004EDEDC5 | : | : | : | : |
Description
BnaC05g09420DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078GZS0]
Coordinates
chrLK032248:+:438143..439852
Molecular Weight (calculated)
31180.2 Da
IEP (calculated)
9.361
GRAVY (calculated)
-0.433
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSFNTTLH QSSLSPCSSI KLYSGLKPQS SSFLTNGYQN LNKELYGRIH KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG QRFAMPLSRI ALTSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PVETIFKDLS RVKRFNAEEA VEYGLIDKIV RPPRIKDDAP RQDETSGLG
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG QRFAMPLSRI ALTSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PVETIFKDLS RVKRFNAEEA VEYGLIDKIV RPPRIKDDAP RQDETSGLG
001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG
Arabidopsis Description
CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.