CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030756.1-P	Field mustard	plastid	100.0	100.0
CDY32150	Canola	plastid	99.07	98.46
CDY71339	Canola	endoplasmic reticulum	35.29	89.06
CDX95009	Canola	plastid	83.28	87.62
AT1G09130.3	Thale cress	plastid	92.26	80.54
VIT_14s0060g02160.t01	Wine grape	plastid	75.23	75.47
KRG96809	Soybean	plastid	74.3	73.39
KRH68514	Soybean	plastid	73.06	72.84
Solyc01g099690.2.1	Tomato	plastid	71.21	70.55
GSMUA_Achr3P08150_001	Banana	plastid	67.8	64.99
TraesCS4D01G167900.1	Wheat	golgi, plastid	61.61	59.05
Zm00001d029121_P005	Maize	plastid	61.92	59.0
OQU92609	Sorghum	plastid	61.92	59.0
TraesCS4B01G154900.3	Wheat	plastid	61.3	58.75
TraesCS4A01G139700.3	Wheat	plastid	61.3	58.75
Os03t0344900-00	Rice	plastid	61.92	58.65
HORVU4Hr1G046480.1	Barley	plastid	61.3	53.23
CDY71709	Canola	endoplasmic reticulum, extracellular	26.93	45.55
CDX69964	Canola	plastid	16.1	34.67
CDY35605	Canola	plastid	32.2	34.32
CDY09652	Canola	plastid	32.2	34.21
CDY42955	Canola	plastid	32.2	34.1
CDY46278	Canola	cytosol	23.84	34.07
CDY09656	Canola	plastid	32.2	33.99
CDX90492	Canola	plastid	32.2	33.88
CDY43468	Canola	plastid	17.65	32.39
CDY02210	Canola	mitochondrion	22.91	31.49
CDY61915	Canola	mitochondrion	22.29	30.51
CDY21523	Canola	mitochondrion	21.67	29.41
CDY68541	Canola	cytosol	11.15	28.8
CDY03582	Canola	plastid	34.67	28.79
CDY59367	Canola	plastid	34.37	28.61
CDY51306	Canola	plastid	23.53	27.44
CDY31211	Canola	plastid	22.6	27.04
CDX89962	Canola	plastid	24.46	26.87
CDY38981	Canola	plastid	23.84	26.46
CDY39425	Canola	plastid	23.53	26.39
CDY34832	Canola	plastid	22.29	26.37
CDY21009	Canola	plastid	21.98	26.3
CDY15250	Canola	plastid	24.46	25.82
CDY15433	Canola	plastid	23.84	25.33
CDX98066	Canola	plastid	21.67	25.09
CDY30078	Canola	plastid	21.67	25.09
CDY26563	Canola	plastid	20.74	24.1
CDX96137	Canola	plastid	22.29	23.0
CDY36212	Canola	plastid	22.29	23.0
CDY34630	Canola	plastid	12.07	21.91
CDY69283	Canola	plastid	13.93	21.43
CDY15997	Canola	plastid	21.36	14.14

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	GO:A0A078H0W7	UniProt:A0A078H0W7	EnsemblPlants:CDY31112	ProteinID:CDY31112
ProteinID:CDY31112.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00047195001	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF6	SUPFAM:SSF52096
UniParc:UPI0001CA8F75	SEG:seg	:	:	:	:

Description

BnaA08g26620DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078H0W7]

Coordinates

chrLK032267:+:274685..277258

Molecular Weight (calculated)

35408.1 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.124

Length

323 amino acids

Sequence
(BLAST)

001: MASCLQASMN SLLPRSSPPL SLNSSGRRNS KAFRVKAAAK IPMPPINPND PFLSKLASVA AQSPERLIAR PLNADTPPYL DIFDSPQLMS SPAQVERSVA
101: YNEHRPRTPP PDLPSMLLDG RIVYIGMPLV PAVTELIVAE LMYLQWLDPK EPIYIYINST GTTRDDGETV GMESEGFAIY DSLMQLKNEV HTVCVGAAIG
201: HACLLLSAGT KGKRFMMPHS KAMIQQPRVP SSGLMPASDV LIRAKEVITN RDILVGLLAK HTGNSVETVA NVMRRPYYMD ALKAKEFGVI DKVLWRGQEK
301: IIADVVPSDE FDKNAGIRSA ERV

Best Arabidopsis Sequence Match ( AT1G09130.3 )
(BLAST)

001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSAS WRRTNRLTKI TLAADCLVSN HLVNVNMRLG ESYLKDLEIL

Arabidopsis Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.