CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71339	Canola	endoplasmic reticulum	36.48	87.5
CDY31112	Canola	plastid	87.62	83.28
CDY32150	Canola	plastid	87.3	82.46
AT1G09130.3	Thale cress	plastid	88.93	73.78
VIT_14s0060g02160.t01	Wine grape	plastid	69.71	66.46
KRG96809	Soybean	plastid	69.71	65.44
KRH68514	Soybean	plastid	68.73	65.12
Solyc01g099690.2.1	Tomato	plastid	66.12	62.27
GSMUA_Achr3P08150_001	Banana	plastid	61.89	56.38
TraesCS4D01G167900.1	Wheat	golgi, plastid	56.68	51.63
TraesCS4A01G139700.3	Wheat	plastid	56.35	51.34
TraesCS4B01G154900.3	Wheat	plastid	56.03	51.04
Zm00001d029121_P005	Maize	plastid	56.35	51.03
OQU92609	Sorghum	plastid	56.03	50.74
Os03t0344900-00	Rice	plastid	56.03	50.44
HORVU4Hr1G046480.1	Barley	plastid	56.35	46.51
CDY71709	Canola	endoplasmic reticulum, extracellular	26.38	42.41
CDX69964	Canola	plastid	16.29	33.33
CDY42955	Canola	plastid	29.97	30.16
CDY35605	Canola	plastid	29.32	29.7
CDY09652	Canola	plastid	29.32	29.61
CDY09656	Canola	plastid	29.32	29.41
CDX90492	Canola	plastid	29.32	29.32
CDY43468	Canola	plastid	16.61	28.98
CDY02210	Canola	mitochondrion	21.17	27.66
CDY61915	Canola	mitochondrion	19.87	25.85
CDY21523	Canola	mitochondrion	19.87	25.63
CDY68541	Canola	cytosol	10.42	25.6
CDY46278	Canola	cytosol	18.57	25.22
CDY31211	Canola	plastid	21.82	24.81
CDY59367	Canola	plastid	31.27	24.74
CDY03582	Canola	plastid	31.27	24.68
CDY51306	Canola	plastid	21.82	24.19
CDY21009	Canola	plastid	21.17	24.07
CDY34832	Canola	plastid	21.17	23.81
CDX89962	Canola	plastid	22.8	23.81
CDY38981	Canola	plastid	22.15	23.37
CDY30078	Canola	plastid	21.17	23.3
CDY39425	Canola	plastid	21.82	23.26
CDY34630	Canola	plastid	13.36	23.03
CDX98066	Canola	plastid	20.85	22.94
CDY15250	Canola	plastid	22.8	22.88
CDY15433	Canola	plastid	22.48	22.7
CDX96137	Canola	plastid	22.8	22.36
CDY36212	Canola	plastid	22.8	22.36
CDY26563	Canola	plastid	19.87	21.94
CDY69283	Canola	plastid	13.68	20.0
CDY15997	Canola	plastid	20.85	13.11

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	GO:A0A078E356	EnsemblPlants:CDX95009	ProteinID:CDX95009	ProteinID:CDX95009.1
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00100522001
PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF6	SUPFAM:SSF52096	UniParc:UPI0004EE8C6E
SEG:seg	:	:	:	:	:

Description

BnaC05g06620D

Coordinates

chrLK031886:+:668800..670695

Molecular Weight (calculated)

33652.6 Da

IEP (calculated)

8.219

GRAVY (calculated)

-0.151

Length

307 amino acids

Sequence
(BLAST)

001: MASCLQASMN SLLTRSSSSF KSHPPSLSTS GRTNSKSFRH AFRAIASAKI PMPPINSNDP FLSTLASVAA QSSEKLLNRP VNSDTPPYLD IFDSPQLMSS
101: PAQVERSNCL HWMPLVPAVT ELVVAELMYL QWLDPKEPIC IYINSTGTTR DDGETVGMES EGFAIYDSLM QLKNEVHTVC VGAAIGHACL LLSAGTKGKR
201: FMMPHSKAMI QQPRMPSSGL MPASDVLIRA KEVITNRDIL VELLSKHTGN SVETVANVMR RPYYAPKAKE FGVIDKILWR GQEKIIADVV PSDDFDKNAG
301: IRSAERV

Best Arabidopsis Sequence Match ( AT1G09130.3 )
(BLAST)

001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSAS WRRTNRLTKI TLAADCLVSN HLVNVNMRLG ESYLKDLEIL

Arabidopsis Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.