CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96809	Soybean	plastid	94.44	93.58
VIT_14s0060g02160.t01	Wine grape	plastid	79.32	79.81
CDY71339	Canola	endoplasmic reticulum	30.56	77.34
Solyc01g099690.2.1	Tomato	plastid	74.69	74.23
Bra030756.1-P	Field mustard	plastid	72.84	73.06
CDY31112	Canola	plastid	72.84	73.06
CDY32150	Canola	plastid	72.22	72.0
CDX95009	Canola	plastid	65.12	68.73
GSMUA_Achr3P08150_001	Banana	plastid	70.37	67.66
AT1G09130.3	Thale cress	plastid	75.31	65.95
OQU92609	Sorghum	plastid	62.96	60.18
Zm00001d029121_P005	Maize	plastid	62.65	59.88
TraesCS4D01G167900.1	Wheat	golgi, plastid	62.04	59.64
Os03t0344900-00	Rice	plastid	62.65	59.53
TraesCS4B01G154900.3	Wheat	plastid	61.73	59.35
TraesCS4A01G139700.3	Wheat	plastid	61.73	59.35
HORVU4Hr1G046480.1	Barley	plastid	61.73	53.76
KRH04225	Soybean	plastid	32.41	34.54
KRH57519	Soybean	plastid	31.17	33.22
KRH29139	Soybean	mitochondrion, nucleus	22.22	30.25
KRH24178	Soybean	mitochondrion	21.6	29.66
KRG91103	Soybean	plastid	33.02	28.76
KRH35674	Soybean	plastid	32.72	28.49
KRH39679	Soybean	nucleus, plastid	24.38	25.82
KRH29491	Soybean	plastid	21.6	25.64
KRH76388	Soybean	nucleus, plastid	24.07	25.49
KRH24490	Soybean	plastid	20.99	24.91
KRH31786	Soybean	nucleus, plastid	21.6	23.1
KRH69210	Soybean	nucleus, plastid	21.91	22.83
KRH57313	Soybean	endoplasmic reticulum, extracellular	20.37	21.15
KRH70450	Soybean	plastid	20.68	21.0
KRH68271	Soybean	plastid	19.44	20.93
KRH01676	Soybean	plastid	20.68	20.81
KRH04045	Soybean	mitochondrion	20.37	19.24

Protein Annotations

EntrezGene:100809485	MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EMBL:ACUP02002119	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	EnsemblPlantsGene:GLYMA_03G235800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:K7KGM9	ProteinID:KRH68512.1
ProteinID:KRH68513.1	EnsemblPlants:KRH68514	ProteinID:KRH68514	ProteinID:KRH68514.1	ProteinID:KRH68515.1	ProteinID:KRH68516.1
ProteinID:KRH68517.1	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF6	MEROPS:S14.003
SUPFAM:SSF52096	UniParc:UPI000233A1B2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:43581227..43586228

Molecular Weight (calculated)

35569.4 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.165

Length

324 amino acids

Sequence
(BLAST)

001: MSMMAAYLRV PTSTPITPQS PTATRTKCRN LKTSCSVNAA KIPMPPLNPK DPFLSKLASI AASSPDTLLN TPKNSDTPPF LDIFDSPKLM ATPAQVERSV
101: SYNEHRPRRP PPDLPSLLLH GRIVYIGMPL VPAVTELVVA ELMYLQYMDP KEPIFIYINS TGTTRDDGET VGMETEGFAI YDAMMQLKNE IHTVAVGSAI
201: GQACLLLSAG TPGKRFMMPH AKAMIQQPRI PSSGLMPASD VLIRAKEVII NRDNLVKLLA KHTGNSEETV ANVMKRPYYM DATRAKEFGV IDRILWRGQE
301: KVMADVASPD DWDKGAGIKI VDGF

Best Arabidopsis Sequence Match ( AT1G09130.1 )
(BLAST)

001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSVV

Arabidopsis Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.