CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31786	Soybean	nucleus, plastid	93.57	96.04
CDY51306	Canola	plastid	73.63	82.67
AT1G02560.1	Thale cress	plastid	78.78	82.21
Bra033332.1-P	Field mustard	plastid	77.49	81.97
CDX89962	Canola	plastid	77.49	81.97
VIT_07s0005g01530.t01	Wine grape	plastid	74.92	80.62
Zm00001d047634_P002	Maize	cytosol	60.77	80.08
CDY15250	Canola	plastid	77.81	79.08
Bra030504.1-P	Field mustard	plastid	75.24	78.26
CDY15433	Canola	plastid	75.24	76.97
Solyc01g100520.2.1	Tomato	plastid	73.95	76.92
GSMUA_Achr8P22320_001	Banana	plastid	71.7	74.33
EER92371	Sorghum	plastid	67.2	73.85
TraesCS4D01G184400.1	Wheat	plastid	66.56	73.4
Os03t0308100-01	Rice	plastid	66.24	73.05
TraesCS4B01G181600.1	Wheat	plastid	65.92	72.69
TraesCS4A01G121500.1	Wheat	plastid	65.92	72.69
KRH68271	Soybean	plastid	66.88	69.1
HORVU4Hr1G053660.1	Barley	plastid	66.24	67.32
Zm00001d028895_P001	Maize	plastid	66.88	66.45
KRH29139	Soybean	mitochondrion, nucleus	34.41	44.96
KRH24178	Soybean	mitochondrion	33.12	43.64
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	73.95	40.78
KRH01676	Soybean	plastid	37.3	36.02
KRH24490	Soybean	plastid	31.51	35.9
KRH29491	Soybean	plastid	31.51	35.9
KRH70450	Soybean	plastid	36.66	35.74
KRH39679	Soybean	nucleus, plastid	31.51	32.03
KRH76388	Soybean	nucleus, plastid	31.51	32.03
KRH57313	Soybean	endoplasmic reticulum, extracellular	29.58	29.49
KRH57519	Soybean	plastid	27.01	27.63
KRH04225	Soybean	plastid	26.69	27.3
KRH04045	Soybean	mitochondrion	28.62	25.95
KRG96809	Soybean	plastid	23.15	22.02
KRH68514	Soybean	plastid	22.83	21.91
KRH35674	Soybean	plastid	23.15	19.35
KRG91103	Soybean	plastid	23.15	19.35

Protein Annotations

EntrezGene:100798621	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EMBL:ACUP02000690	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	EnsemblPlantsGene:GLYMA_02G011800	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0016787	GO:GO:0019538	UniProt:I1JBF6	EnsemblPlants:KRH69210	ProteinID:KRH69210	ProteinID:KRH69210.1
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF12	MEROPS:S14.A01	SUPFAM:SSF52096	UniParc:UPI00023BDE98	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:1082056..1086366

Molecular Weight (calculated)

33864.5 Da

IEP (calculated)

8.742

GRAVY (calculated)

-0.207

Length

311 amino acids

Sequence
(BLAST)

001: MAHTSLFTPS SSLRFNPLLL TSTPSSSSSS RSNNLSFPAL SSLALICRNL RKSVEDRKIN KKSAVKAVYG DEFWTPERSS RPGIWSIRSD LQVPSSPYFP
101: TYAQGQGPPP MVAERFQSVI SQLFQYRIIR CGGAVDDDMA NIIVAQLLYL DAVDPNKDIV MYVNSPGGSV TAGMAIFDTM RHIRPDVSTV CVGLAASMGA
201: FLLSAGTKGK RYSLPNSRIM IHQPLGGAQG GQTDIDIQAN EMLHHKANLN GYLAYHTGQS LDKINQDTDR DFFMSAKEAK EYGLIDGVIM NPLKALQPLE
301: AAAEGKDRAS V

Best Arabidopsis Sequence Match ( AT1G02560.1 )
(BLAST)

001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA

Arabidopsis Description

CLPP5ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.