CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69210	Soybean	nucleus, plastid	96.04	93.57
AT1G02560.1	Thale cress	plastid	81.19	82.55
CDY51306	Canola	plastid	75.25	82.31
Bra033332.1-P	Field mustard	plastid	79.54	81.97
CDX89962	Canola	plastid	79.54	81.97
VIT_07s0005g01530.t01	Wine grape	plastid	76.9	80.62
Zm00001d047634_P002	Maize	cytosol	62.38	80.08
Bra030504.1-P	Field mustard	plastid	78.22	79.26
CDY15250	Canola	plastid	79.87	79.08
CDY15433	Canola	plastid	78.22	77.96
Solyc01g100520.2.1	Tomato	plastid	75.25	76.25
EER92371	Sorghum	plastid	67.99	72.79
GSMUA_Achr8P22320_001	Banana	plastid	71.95	72.67
TraesCS4D01G184400.1	Wheat	plastid	66.67	71.63
Os03t0308100-01	Rice	plastid	66.67	71.63
TraesCS4B01G181600.1	Wheat	plastid	66.01	70.92
TraesCS4A01G121500.1	Wheat	plastid	66.01	70.92
KRH68271	Soybean	plastid	67.33	67.77
HORVU4Hr1G053660.1	Barley	plastid	66.34	65.69
Zm00001d028895_P001	Maize	plastid	67.66	65.5
KRH29139	Soybean	mitochondrion, nucleus	35.31	44.96
KRH24178	Soybean	mitochondrion	33.99	43.64
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	74.26	39.89
KRH01676	Soybean	plastid	38.28	36.02
KRH29491	Soybean	plastid	32.34	35.9
KRH24490	Soybean	plastid	32.34	35.9
KRH70450	Soybean	plastid	37.62	35.74
KRH39679	Soybean	nucleus, plastid	32.34	32.03
KRH76388	Soybean	nucleus, plastid	32.34	32.03
KRH57313	Soybean	endoplasmic reticulum, extracellular	29.7	28.85
KRH57519	Soybean	plastid	27.39	27.3
KRH04225	Soybean	plastid	27.39	27.3
KRH04045	Soybean	mitochondrion	29.04	25.66
KRG96809	Soybean	plastid	23.43	21.71
KRH68514	Soybean	plastid	23.1	21.6
KRH35674	Soybean	plastid	23.76	19.35
KRG91103	Soybean	plastid	23.76	19.35

Protein Annotations

EntrezGene:100802533	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EMBL:ACUP02006086	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	EnsemblPlantsGene:GLYMA_10G012300	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0016787	GO:GO:0019538	UniProt:I1L7P0	EnsemblPlants:KRH31786	ProteinID:KRH31786	ProteinID:KRH31786.1
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF12	MEROPS:S14.A01	SUPFAM:SSF52096	UniParc:UPI000233C1EC	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:1127474..1131792

Molecular Weight (calculated)

32954.2 Da

IEP (calculated)

8.204

GRAVY (calculated)

-0.238

Length

303 amino acids

Sequence
(BLAST)

001: MGHTSLFTPS SSLRFNSLLV SSTPSSSSRS NSVSFPALSR NIRKSVEDRK INKNSAVKAV YGDEFWTPAR SSPQDIWSIR SDLQVPSSPY FPTYAQGQGP
101: PPMVAERFQS VISQLFQYRI IRCGGAVDDD MANIIVAQLL YLDAVDPNKD IVMYVNSPGG SVTAGMAIFD TMRHIRPDVS TVCVGLAASM GAFLLSAGTK
201: GKRYSLPNSR IMIHQPLGGA QGGQTDIDIQ ANEMLHHKAN LNGYLAYHTG QSLDKINQDT DRDFFMSAKE AKEYGLIDGV IMNPLKALQP LEAAAEGKDR
301: ASV

Best Arabidopsis Sequence Match ( AT1G02560.1 )
(BLAST)

001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA

Arabidopsis Description

CLPP5ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.