Factsheet for Zm00001d028895_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92371	Sorghum	plastid	85.94	95.05
Zm00001d047634_P002	Maize	cytosol	71.25	94.49
Os03t0308100-01	Rice	plastid	81.47	90.43
TraesCS4D01G184400.1	Wheat	plastid	79.23	87.94
TraesCS4A01G121500.1	Wheat	plastid	78.59	87.23
TraesCS4B01G181600.1	Wheat	plastid	78.59	87.23
HORVU4Hr1G053660.1	Barley	plastid	78.91	80.72
Bra033332.1-P	Field mustard	plastid	65.81	70.07
CDX89962	Canola	plastid	65.81	70.07
AT1G02560.1	Thale cress	plastid	65.81	69.13
CDY51306	Canola	plastid	61.02	68.95
VIT_07s0005g01530.t01	Wine grape	plastid	62.62	67.82
KRH31786	Soybean	nucleus, plastid	65.5	67.66
Solyc01g100520.2.1	Tomato	plastid	64.22	67.22
GSMUA_Achr8P22320_001	Banana	plastid	64.22	67.0
KRH69210	Soybean	nucleus, plastid	66.45	66.88
CDY15250	Canola	plastid	65.18	66.67
Bra030504.1-P	Field mustard	plastid	63.26	66.22
CDY15433	Canola	plastid	63.26	65.13
KRH68271	Soybean	plastid	53.35	55.48
Zm00001d025891_P001	Maize	mitochondrion	33.87	40.77
Zm00001d002969_P001	Maize	mitochondrion	33.23	40.15
Zm00001d017330_P001	Maize	plastid	36.1	40.07
Zm00001d051203_P001	Maize	plastid	38.34	39.47
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	62.94	34.93
Zm00001d009339_P001	Maize	plastid	33.87	34.19
Zm00001d030149_P001	Maize	mitochondrion	31.95	31.45
GRMZM5G804708_P01	Maize	plastid	21.41	31.02
Zm00001d040322_P002	Maize	plastid	24.28	26.3
Zm00001d045430_P002	Maize	plastid	25.56	24.69
Zm00001d029121_P005	Maize	plastid	23.64	21.83
Zm00001d039167_P001	Maize	plastid	24.6	19.85

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	UniProt:A0A1D6K0D4	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538
HAMAP:MF_00444	ProteinID:ONL97268.1	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382
PANTHER:PTHR10381	PANTHER:PTHR10381:SF12	SUPFAM:SSF52096	UniParc:UPI0008459EB0	EnsemblPlantsGene:Zm00001d028895	EnsemblPlants:Zm00001d028895_P001
EnsemblPlants:Zm00001d028895_T001	SEG:seg	:	:	:	:

Description

chloroplast protease complex P2ATP-dependent Clp protease proteolytic subunit 5 chloroplastic

Coordinates

chr1:-:49992905..49996375

Molecular Weight (calculated)

33949.3 Da

IEP (calculated)

9.547

GRAVY (calculated)

-0.081

Length

313 amino acids

Sequence
(BLAST)

001: MAIATTTSSS SLTIRLLHPN PNTNPAPRSL QLLSSRRCAR AAVAGGAVPY GAAPRRGIWS IRWNLFLALR ASRRLPEMGL VRCHGVSKAA RACVRDDLVV
101: PRSPYFPVDS AAGQERGPSP MVMERFQSVV SQLFQHRIIR CGGPVEDDMA NIIVAQLLYL DAIDPTKDII MYVNSPGGSV TAGMAIFDTM KHIRPDVSTV
201: CIGLAASMGA FLLSAGTKGK RYSLPNSRIM IHQPLGGAQG QETDLEIQAN EMLHHKANLN GYLAYHTGQP LDKINVDTDR DYFMSAKEAK EYGLIDGVIM
301: NPLKALQPLP ASS

Best Arabidopsis Sequence Match ( AT1G02560.1 )
(BLAST)

001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA

Arabidopsis Description

CLPP5ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.