Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20089766
extracellular: 20408568 plastid: 22065420 plastid: 23198870 |
msms PMID:
20089766
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051203_P001 | Maize | plastid | 93.97 | 87.17 |
| OQU85365 | Sorghum | plastid | 95.39 | 87.06 |
| Os02t0634500-01 | Rice | plastid | 80.85 | 76.51 |
| TraesCS6A01G220500.1 | Wheat | plastid | 81.21 | 76.33 |
| TraesCS6B01G262000.1 | Wheat | plastid | 80.85 | 76.0 |
| TraesCS6D01G214700.1 | Wheat | plastid | 79.43 | 75.68 |
| Zm00001d002969_P001 | Maize | mitochondrion | 68.44 | 74.52 |
| Zm00001d025891_P001 | Maize | mitochondrion | 68.09 | 73.85 |
| GSMUA_AchrUn_... | Banana | cytosol | 51.77 | 71.92 |
| CDX69964 | Canola | plastid | 33.69 | 63.33 |
| CDY61915 | Canola | mitochondrion | 51.42 | 61.44 |
| KRH29139 | Soybean | mitochondrion, nucleus | 51.42 | 60.92 |
| PGSC0003DMT400082481 | Potato | mitochondrion | 50.71 | 60.59 |
| Solyc04g009310.2.1 | Tomato | plastid | 50.71 | 60.59 |
| KRH24178 | Soybean | mitochondrion | 50.71 | 60.59 |
| VIT_01s0011g02100.t01 | Wine grape | mitochondrion | 51.77 | 60.58 |
| Bra009331.1-P | Field mustard | mitochondrion | 51.06 | 60.5 |
| CDY21523 | Canola | mitochondrion | 51.06 | 60.5 |
| Bra013020.1-P | Field mustard | mitochondrion | 50.35 | 60.43 |
| CDY02210 | Canola | mitochondrion | 50.0 | 60.0 |
| PGSC0003DMT400027435 | Potato | mitochondrion | 50.35 | 59.66 |
| AT5G23140.1 | Thale cress | mitochondrion, plastid | 50.35 | 58.92 |
| GSMUA_Achr5P10890_001 | Banana | plastid | 55.67 | 58.8 |
| HORVU6Hr1G059510.8 | Barley | cytosol, peroxisome | 80.85 | 52.66 |
| Zm00001d047634_P002 | Maize | cytosol | 36.52 | 43.64 |
| Zm00001d028895_P001 | Maize | plastid | 40.07 | 36.1 |
| Zm00001d040322_P002 | Maize | plastid | 29.08 | 28.37 |
| Zm00001d030149_P001 | Maize | mitochondrion | 31.56 | 27.99 |
| GRMZM5G804708_P01 | Maize | plastid | 20.92 | 27.31 |
| Zm00001d009339_P001 | Maize | plastid | 29.43 | 26.77 |
| Zm00001d029121_P005 | Maize | plastid | 30.14 | 25.07 |
| Zm00001d045430_P002 | Maize | plastid | 24.82 | 21.6 |
| Zm00001d039167_P001 | Maize | plastid | 23.4 | 17.01 |
Protein Annotations
| Gene3D:3.90.226.10 | MapMan:35.1 | UniProt:A0A1D6HE45 | ProteinID:AQK72922.1 | InterPro:ClpP | InterPro:ClpP/TepA |
| InterPro:ClpP/crotonase-like_dom_sf | InterPro:ClpP_His_AS | InterPro:ClpP_Ser_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008236 | GO:GO:0016787 |
| GO:GO:0019538 | HAMAP:MF_00444 | PFAM:PF00574 | PRINTS:PR00127 | ScanProsite:PS00381 | ScanProsite:PS00382 |
| PANTHER:PTHR10381 | PANTHER:PTHR10381:SF40 | SUPFAM:SSF52096 | UniParc:UPI0008428104 | EnsemblPlantsGene:Zm00001d017330 | EnsemblPlants:Zm00001d017330_P001 |
| EnsemblPlants:Zm00001d017330_T001 | SEG:seg | : | : | : | : |
Description
ATP-dependent Clp protease proteolytic subunit
Coordinates
chr5:+:193146758..193147606
Molecular Weight (calculated)
30246.5 Da
IEP (calculated)
6.876
GRAVY (calculated)
-0.191
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPSSALALA HHAAVSPLPS STPRPSPRSS SLSLGPGSAG LGPRRPEGFS QHREYGLVPM VIETTSRGER AYDIFSRLLK ERIVCIHGPI ADDTASLVVA
101: QLLFLESENP LKPVHLYINS PGGVVTAGLA IYDTMQYIRC PVTTLCIGQA ASMGSLLLAA GAPGERRALP NARVMIHQPS GGAQGQATDI AIQAKEILKM
201: RDRLNKIYQK HTRQPIDKIE QCMERDLFMD PEEARDWGLI DEVIENRPAS FMPDGIGGGL DVPRLGGVGG GRGRDVEEPS AV
101: QLLFLESENP LKPVHLYINS PGGVVTAGLA IYDTMQYIRC PVTTLCIGQA ASMGSLLLAA GAPGERRALP NARVMIHQPS GGAQGQATDI AIQAKEILKM
201: RDRLNKIYQK HTRQPIDKIE QCMERDLFMD PEEARDWGLI DEVIENRPAS FMPDGIGGGL DVPRLGGVGG GRGRDVEEPS AV
001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S
Arabidopsis Description
CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.