Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017330_P001 | Maize | plastid | 87.17 | 93.97 |
| OQU85365 | Sorghum | plastid | 93.75 | 92.23 |
| TraesCS6A01G220500.1 | Wheat | plastid | 81.58 | 82.67 |
| Os02t0634500-01 | Rice | plastid | 80.92 | 82.55 |
| TraesCS6B01G262000.1 | Wheat | plastid | 81.25 | 82.33 |
| TraesCS6D01G214700.1 | Wheat | plastid | 79.93 | 82.09 |
| Zm00001d002969_P001 | Maize | mitochondrion | 67.43 | 79.15 |
| Zm00001d025891_P001 | Maize | mitochondrion | 67.11 | 78.46 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.68 | 72.91 |
| CDX69964 | Canola | plastid | 31.25 | 63.33 |
| CDY61915 | Canola | mitochondrion | 49.01 | 63.14 |
| KRH29139 | Soybean | mitochondrion, nucleus | 49.01 | 62.6 |
| KRH24178 | Soybean | mitochondrion | 48.36 | 62.29 |
| VIT_01s0011g02100.t01 | Wine grape | mitochondrion | 49.34 | 62.24 |
| CDY21523 | Canola | mitochondrion | 48.36 | 61.76 |
| Bra009331.1-P | Field mustard | mitochondrion | 48.36 | 61.76 |
| Bra013020.1-P | Field mustard | mitochondrion | 47.7 | 61.7 |
| PGSC0003DMT400082481 | Potato | mitochondrion | 47.7 | 61.44 |
| Solyc04g009310.2.1 | Tomato | plastid | 47.7 | 61.44 |
| CDY02210 | Canola | mitochondrion | 47.37 | 61.28 |
| AT5G23140.1 | Thale cress | mitochondrion, plastid | 48.36 | 61.0 |
| PGSC0003DMT400027435 | Potato | mitochondrion | 47.37 | 60.5 |
| GSMUA_Achr5P10890_001 | Banana | plastid | 52.63 | 59.93 |
| HORVU6Hr1G059510.8 | Barley | cytosol, peroxisome | 81.25 | 57.04 |
| Zm00001d047634_P002 | Maize | cytosol | 35.2 | 45.34 |
| Zm00001d028895_P001 | Maize | plastid | 39.47 | 38.34 |
| Zm00001d030149_P001 | Maize | mitochondrion | 30.26 | 28.93 |
| GRMZM5G804708_P01 | Maize | plastid | 20.39 | 28.7 |
| Zm00001d040322_P002 | Maize | plastid | 26.97 | 28.37 |
| Zm00001d009339_P001 | Maize | plastid | 27.96 | 27.42 |
| Zm00001d029121_P005 | Maize | plastid | 28.62 | 25.66 |
| Zm00001d045430_P002 | Maize | plastid | 24.34 | 22.84 |
| Zm00001d039167_P001 | Maize | plastid | 22.04 | 17.27 |
Protein Annotations
| EntrezGene:100273342 | Gene3D:3.90.226.10 | MapMan:35.1 | ProteinID:AQK53805.1 | UniProt:B4FUS5 | EMBL:BT040863 |
| InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | InterPro:ClpP_His_AS | InterPro:ClpP_Ser_AS | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004252 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0008236 | GO:GO:0016787 | GO:GO:0019538 | HAMAP:MF_00444 | PFAM:PF00574 | PRINTS:PR00127 |
| ScanProsite:PS00381 | ScanProsite:PS00382 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF40 | MEROPS:S14.A02 | SUPFAM:SSF52096 |
| UniParc:UPI00017B7CE0 | EnsemblPlantsGene:Zm00001d051203 | EnsemblPlants:Zm00001d051203_P001 | EnsemblPlants:Zm00001d051203_T001 | SEG:seg | : |
Description
ATP-dependent Clp protease proteolytic subunit
Coordinates
chr4:+:148592297..148593612
Molecular Weight (calculated)
32174.6 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.165
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPSSALALA LQAAASPLPA STPRSSPRSS SLSLGRGTAG NGPRRLAAAA PPRAFFSSSP YQPPQPEGFS PHREYGLVPM VIETTSRGER AYDIFSRLLK
101: ERIVCINGPI ADDTASLVVA QLLFLESENP LKPVHLYINS PGGVVTAGLA IYDTMQYIRC PVTTLCIGQA ASMGSLLLAA GAPGERRALP NARVMIHQPS
201: GGAQGQATDI AIQAKEILKL RDRLNKIYQK HTRQPIDKIE QCMERDLFMD PDEARDWGLI DEVIENRPAS LMPDGIVGGL DVPSLGGGGG GGGRGSDVEE
301: PSAV
101: ERIVCINGPI ADDTASLVVA QLLFLESENP LKPVHLYINS PGGVVTAGLA IYDTMQYIRC PVTTLCIGQA ASMGSLLLAA GAPGERRALP NARVMIHQPS
201: GGAQGQATDI AIQAKEILKL RDRLNKIYQK HTRQPIDKIE QCMERDLFMD PDEARDWGLI DEVIENRPAS LMPDGIVGGL DVPSLGGGGG GGGRGSDVEE
301: PSAV
001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S
Arabidopsis Description
CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.