CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029121_P005	Maize	plastid	94.69	94.69
Os03t0344900-00	Rice	plastid	92.92	92.38
TraesCS4B01G154900.3	Wheat	plastid	88.2	88.72
TraesCS4D01G167900.1	Wheat	golgi, plastid	87.61	88.13
TraesCS4A01G139700.3	Wheat	plastid	87.61	88.13
HORVU4Hr1G046480.1	Barley	plastid	87.91	80.11
CDY71339	Canola	endoplasmic reticulum	25.66	67.97
VIT_14s0060g02160.t01	Wine grape	plastid	63.13	66.46
KRG96809	Soybean	plastid	60.77	63.0
KRH68514	Soybean	plastid	60.18	62.96
Bra030756.1-P	Field mustard	plastid	59.0	61.92
CDY31112	Canola	plastid	59.0	61.92
GSMUA_Achr3P08150_001	Banana	plastid	60.77	61.13
CDY32150	Canola	plastid	58.41	60.92
Solyc01g099690.2.1	Tomato	plastid	57.52	59.82
CDX95009	Canola	plastid	50.74	56.03
AT1G09130.3	Thale cress	plastid	58.7	53.78
EES00561	Sorghum	plastid	29.79	34.71
OQU85365	Sorghum	plastid	26.84	29.45
KXG26753	Sorghum	plastid	25.66	29.0
EER92371	Sorghum	plastid	22.12	26.5
EER94414	Sorghum	plastid	20.65	24.22
EES20050	Sorghum	plastid	25.96	22.68
EES07709	Sorghum	plastid	18.29	22.46
KXG19238	Sorghum	plastid	18.58	21.58
EES00782	Sorghum	plastid	19.17	20.77

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EntrezGene:8082668	UniProt:A0A1Z5S9T7	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009941
GO:GO:0016787	GO:GO:0019538	EnsemblPlants:OQU92609	ProteinID:OQU92609	ProteinID:OQU92609.1	PFAM:PF00574
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF6	EnsemblPlantsGene:SORBI_3001G375000	SUPFAM:SSF52096	UniParc:UPI0001A8226A
RefSeq:XP_002465289.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:66351286..66356257

Molecular Weight (calculated)

36795.7 Da

IEP (calculated)

9.589

GRAVY (calculated)

-0.186

Length

339 amino acids

Sequence
(BLAST)

001: MTSAFLSLRL PTPSPSHAAS SPSLPSPLLR QARGGVASSA LVARAAGPAG AAGAPSPLFN PRGDPFLSTL AAASPEDLAA AAGGERRGED HLPFLEIFQN
101: AKLMASPAQV ERSSSSYSQH RPRRPPPDLP SLLLHGRIVY IGMPLVPAVT ELVVAQLMYL EWMNSKEPVY IYINSTGTAR DDGEPVGMES EGFAIYDAMM
201: RMNTEIHTLC IGAAAGHACL VLAAGKKGKR YMFPHAKAMI QQPRIPSYGM MQASDVVIRA KEVVHNRNTL VKLLARHTGN PPEKIDKVMR GPFYMDSLKA
301: KEFGVIDKIL WRGQEKYMAD MLSPDEWDKV AGVRRPDPM

Best Arabidopsis Sequence Match ( AT1G09130.1 )
(BLAST)

001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSVV

Arabidopsis Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.