CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G083440.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.72	92.21
Os03t0411500-01	Rice	plastid	79.71	84.94
TraesCS4D01G157200.1	Wheat	plastid	73.91	76.69
TraesCS4B01G165100.1	Wheat	plastid	72.83	75.56
TraesCS4A01G149900.1	Wheat	plastid	73.91	73.65
HORVU4Hr1G038160.2	Barley	plastid	73.55	71.73
CDY21009	Canola	plastid	56.88	58.15
CDY31211	Canola	plastid	56.88	58.15
VIT_03s0063g02300.t01	Wine grape	plastid	56.52	57.99
PGSC0003DMT400084282	Potato	plastid	57.25	57.45
GSMUA_Achr8P05270_001	Banana	plastid	55.07	57.14
Solyc10g051310.1.1	Tomato	plastid	56.88	57.09
Bra016816.1-P	Field mustard	plastid	55.8	57.04
Bra031777.1-P	Field mustard	plastid	56.16	56.78
CDY34832	Canola	plastid	56.16	56.78
KRH29491	Soybean	plastid	55.43	56.04
KRH24490	Soybean	plastid	55.07	55.68
AT1G11750.2	Thale cress	plastid	56.16	53.63
CDY34630	Canola	plastid	26.45	41.01
EER94414	Sorghum	plastid	30.8	29.41
EER92371	Sorghum	plastid	28.99	28.27
KXG26753	Sorghum	plastid	28.99	26.67
OQU85365	Sorghum	plastid	29.71	26.54
EES00782	Sorghum	plastid	28.99	25.56
EES00561	Sorghum	plastid	21.74	20.62
KXG19238	Sorghum	plastid	21.01	19.86
OQU92609	Sorghum	plastid	22.46	18.29
EES20050	Sorghum	plastid	21.01	14.95

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EntrezGene:8056407	UniProt:C5XV47	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	EnsemblPlants:EES07709	ProteinID:EES07709	ProteinID:EES07709.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532	GO:GO:0009534
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009840	GO:GO:0009941
GO:GO:0009987	GO:GO:0015979	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	HAMAP:MF_00444
PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF8	EnsemblPlantsGene:SORBI_3004G336200
SUPFAM:SSF52096	unigene:Sbi.15448	UniParc:UPI0001A862FD	RefSeq:XP_002454733.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:66810062..66813559

Molecular Weight (calculated)

30034.3 Da

IEP (calculated)

8.326

GRAVY (calculated)

-0.055

Length

276 amino acids

Sequence
(BLAST)

001: MTATEAALRL GLSATAGQSQ ARRRHQRLLL PPLSSSLTTS PPSSAHRPAT LRFKSVSHGV SSQHAERIHC RSSLRQNTIV ASENENPPLM PAIMTPGGAL
101: DLATVLLGNR VIFIGQYINS QVAQRVISQL VTLAAVDEEA DILIYLNCPG GSLYSILAIY DCMSWIKPKV GTVCFGVVAS QAAIILAGGE KGMRYAMPNA
201: RVMIHQPQGG SEGNVEEVRR QVGETVYARD KVDKMFAAFT GQPLDMVQQW TERDRFMSSS EAMDFGLVDA LLETRY

Best Arabidopsis Sequence Match ( AT1G11750.2 )
(BLAST)

001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP SSLPLPILNI LKSSTVYFIF GVIEAKKGNP
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY

Arabidopsis Description

CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.