CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009339_P001	Maize	plastid	90.1	90.97
Os01t0507900-01	Rice	plastid	81.47	81.21
GSMUA_Achr4P06560_001	Banana	cytosol, plastid, vacuole	17.57	80.88
HORVU3Hr1G044530.1	Barley	plastid	77.0	79.02
TraesCS3B01G229600.1	Wheat	plastid	77.0	78.5
TraesCS3A01G197900.1	Wheat	plastid	77.0	78.5
HORVU3Hr1G044510.1	Barley	extracellular	19.49	70.11
VIT_14s0006g01880.t01	Wine grape	plastid	58.47	57.19
KRH70450	Soybean	plastid	58.15	57.05
Solyc02g091280.2.1	Tomato	plastid	55.91	56.63
KRH01676	Soybean	plastid	57.51	55.9
AT1G66670.1	Thale cress	plastid	54.31	55.02
CDX96137	Canola	plastid	54.31	54.31
Bra004177.1-P	Field mustard	plastid	54.31	54.31
PGSC0003DMT400078756	Potato	plastid	54.31	54.14
CDY36212	Canola	plastid	53.99	53.99
EER92371	Sorghum	plastid	33.87	37.46
EER94414	Sorghum	plastid	31.63	34.26
KXG26753	Sorghum	plastid	27.8	29.0
EES07709	Sorghum	plastid	25.56	28.99
OQU85365	Sorghum	plastid	27.48	27.83
EES00561	Sorghum	plastid	23.96	25.77
KXG19238	Sorghum	plastid	23.64	25.34
OQU92609	Sorghum	plastid	20.77	19.17
EES20050	Sorghum	plastid	21.73	17.53

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EntrezGene:8069569	UniProt:C5XLB5	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	EnsemblPlants:EES00782	ProteinID:EES00782	ProteinID:EES00782.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0009507	GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009840	GO:GO:0009941	GO:GO:0016787	GO:GO:0019538	HAMAP:MF_00444	PFAM:PF00574
PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF20	EnsemblPlantsGene:SORBI_3003G170200
SUPFAM:SSF52096	unigene:Sbi.1296	UniParc:UPI0001A8462E	RefSeq:XP_002455662.1	:	:

Description

hypothetical protein

Coordinates

chr3:+:30293198..30324867

Molecular Weight (calculated)

33740.9 Da

IEP (calculated)

9.820

GRAVY (calculated)

-0.146

Length

313 amino acids

Sequence
(BLAST)

001: MAAFPVLPAP ACTSFSPSSV FLTPCSSDGR STAPRAAAVR GSAVTWAHRT LSARWVPSGL AVARPAARKA RLEELDTSNM LLRQRIVFLG SSVDDTSADL
101: IISQLLLLDA EDQTKDIKLF INSPGGSITA GMGVYDAMKF CKADVSTVCF GLAASMGAFL LAAGTKGKRY CMPNARIMIH QPSGGAGGKV TEMGLQIREM
201: MYEKIKINKI MSRITGKSKE QIDEDTKFDY FMSPWEAKDY GIVDSIIDEG KPGLVAPLAG SVRPPKSRVW YLWKASGPTR KIMKHLPSEE KLINNGNGTA
301: TGDDEKLKRA SAT

Best Arabidopsis Sequence Match ( AT1G66670.1 )
(BLAST)

001: MEMSLRLASS STSNPICLLN PGKNLNFPIR NHRIPKTSKP FCVRSSMSLS KPPRQTLSSN WDVSSFSIDS VAQSPSRLPS FEELDTTNML LRQRIVFLGS
101: QVDDMTADLV ISQLLLLDAE DSERDITLFI NSPGGSITAG MGIYDAMKQC KADVSTVCLG LAASMGAFLL ASGSKGKRYC MPNSKVMIHQ PLGTAGGKAT
201: EMSIRIREMM YHKIKLNKIF SRITGKPESE IESDTDRDNF LNPWEAKEYG LIDAVIDDGK PGLIAPIGDG TPPPKTKVWD LWKVEGTKKD NTNLPSERSM
301: TQNGYAAIE

Arabidopsis Description

CLPP3ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.