Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31211 | Canola | plastid | 87.2 | 93.33 |
| CDY34832 | Canola | plastid | 87.89 | 93.04 |
| CDY21009 | Canola | plastid | 86.51 | 92.59 |
| Bra031777.1-P | Field mustard | plastid | 87.2 | 92.31 |
| Bra016816.1-P | Field mustard | plastid | 86.16 | 92.22 |
| CDY34630 | Canola | plastid | 46.37 | 75.28 |
| KRH29491 | Soybean | plastid | 69.55 | 73.63 |
| VIT_03s0063g02300.t01 | Wine grape | plastid | 68.51 | 73.61 |
| KRH24490 | Soybean | plastid | 69.2 | 73.26 |
| GSMUA_Achr8P05270_001 | Banana | plastid | 64.71 | 70.3 |
| HORVU3Hr1G083440.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 18.69 | 70.13 |
| PGSC0003DMT400084282 | Potato | plastid | 64.36 | 67.64 |
| Solyc10g051310.1.1 | Tomato | plastid | 63.67 | 66.91 |
| Os03t0411500-01 | Rice | plastid | 55.71 | 62.16 |
| TraesCS4D01G157200.1 | Wheat | plastid | 52.6 | 57.14 |
| TraesCS4B01G165100.1 | Wheat | plastid | 52.25 | 56.77 |
| TraesCS4A01G149900.1 | Wheat | plastid | 54.33 | 56.68 |
| EES07709 | Sorghum | plastid | 53.63 | 56.16 |
| HORVU4Hr1G038160.2 | Barley | plastid | 52.94 | 54.06 |
| AT5G23140.1 | Thale cress | mitochondrion, plastid | 26.99 | 32.37 |
| ATCG00670.1 | Thale cress | cytosol | 21.45 | 31.63 |
| AT1G02560.1 | Thale cress | plastid | 31.83 | 30.87 |
| AT1G12410.1 | Thale cress | plastid | 26.3 | 27.24 |
| AT1G66670.1 | Thale cress | plastid | 29.07 | 27.18 |
| AT5G45390.1 | Thale cress | plastid | 26.99 | 26.71 |
| AT4G17040.1 | Thale cress | plastid | 23.18 | 21.97 |
| AT1G09130.3 | Thale cress | plastid | 24.57 | 19.19 |
| AT1G49970.1 | Thale cress | plastid | 21.11 | 15.76 |
Protein Annotations
| MapMan:19.4.2.9.1 | Gene3D:3.90.226.10 | EntrezGene:837719 | ProteinID:AEE28779.1 | ArrayExpress:AT1G11750 | EnsemblPlantsGene:AT1G11750 |
| RefSeq:AT1G11750 | TAIR:AT1G11750 | RefSeq:AT1G11750-TAIR-G | EnsemblPlants:AT1G11750.2 | TAIR:AT1G11750.2 | Unigene:At.10512 |
| Symbol:CLPP6 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | InterPro:ClpP_His_AS | ncoils:Coil |
| UniProt:F4IAG5 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0009507 | GO:GO:0009532 | GO:GO:0009534 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 |
| GO:GO:0009658 | GO:GO:0009840 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0019538 | HAMAP:MF_00444 | RefSeq:NP_001184966.1 | PFAM:PF00574 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00127 | ScanProsite:PS00382 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF8 | SUPFAM:SSF52096 | UniParc:UPI0001E92B45 |
| SEG:seg | : | : | : | : | : |
Description
CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
Coordinates
chr1:+:3967483..3969877
Molecular Weight (calculated)
31315.1 Da
IEP (calculated)
9.657
GRAVY (calculated)
-0.036
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP SSLPLPILNI LKSSTVYFIF GVIEAKKGNP
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY
101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA
201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.