Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71709 | Canola | endoplasmic reticulum, extracellular | 61.97 | 98.95 |
| CDY09652 | Canola | plastid | 96.72 | 97.04 |
| CDY09656 | Canola | plastid | 97.05 | 96.73 |
| Bra040108.1-P | Field mustard | plastid | 96.07 | 96.07 |
| CDY42955 | Canola | plastid | 95.74 | 95.74 |
| CDY35605 | Canola | plastid | 94.75 | 95.38 |
| CDX90492 | Canola | plastid | 95.74 | 95.11 |
| Bra012683.1-P | Field mustard | plastid | 95.74 | 95.11 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 33.44 | 78.46 |
| VIT_00s0204g00220.t01 | Wine grape | plastid | 72.46 | 75.68 |
| KRH57519 | Soybean | plastid | 73.11 | 73.36 |
| KRH04225 | Soybean | plastid | 72.46 | 72.7 |
| PGSC0003DMT400067452 | Potato | plastid | 70.82 | 71.52 |
| Solyc08g077890.2.1 | Tomato | plastid | 70.82 | 71.52 |
| GSMUA_Achr9P24480_001 | Banana | plastid | 70.49 | 64.56 |
| VIT_00s0309g00080.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 35.74 | 64.5 |
| Zm00001d040322_P002 | Maize | plastid | 60.66 | 64.01 |
| EES00561 | Sorghum | plastid | 60.98 | 63.92 |
| TraesCS3B01G216800.1 | Wheat | plastid | 59.67 | 63.86 |
| TraesCS3A01G187300.1 | Wheat | plastid | 59.34 | 63.51 |
| Os01t0271400-00 | Rice | nucleus, plasma membrane, plastid | 61.97 | 63.42 |
| VIT_00s0309g00040.t01 | Wine grape | endoplasmic reticulum | 31.8 | 61.01 |
| HORVU3Hr1G038610.4 | Barley | plastid | 56.39 | 60.56 |
| TraesCS3D01G191100.2 | Wheat | plastid | 59.67 | 58.15 |
| CDY43468 | Canola | plastid | 29.84 | 51.7 |
| AT5G23140.1 | Thale cress | mitochondrion, plastid | 27.54 | 34.85 |
| ATCG00670.1 | Thale cress | cytosol | 18.36 | 28.57 |
| AT1G09130.3 | Thale cress | plastid | 34.1 | 28.11 |
| AT1G02560.1 | Thale cress | plastid | 26.23 | 26.85 |
| AT5G45390.1 | Thale cress | plastid | 25.25 | 26.37 |
| AT1G49970.1 | Thale cress | plastid | 32.46 | 25.58 |
| AT1G12410.1 | Thale cress | plastid | 22.95 | 25.09 |
| AT1G66670.1 | Thale cress | plastid | 24.59 | 24.27 |
| AT1G11750.2 | Thale cress | plastid | 21.97 | 23.18 |
Protein Annotations
| MapMan:19.4.2.9.2 | PDB:1R99 | Gene3D:3.90.226.10 | EntrezGene:827412 | UniProt:A0A178V785 | ProteinID:AEE83842.1 |
| EMBL:AK117499 | ArrayExpress:AT4G17040 | EnsemblPlantsGene:AT4G17040 | RefSeq:AT4G17040 | TAIR:AT4G17040 | RefSeq:AT4G17040-TAIR-G |
| EnsemblPlants:AT4G17040.1 | TAIR:AT4G17040.1 | EMBL:AY081275 | EMBL:AY087492 | EMBL:BT000050 | ProteinID:CAB10484.1 |
| ProteinID:CAB80975.1 | Symbol:CLPR4 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | GO:GO:0000302 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006508 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009532 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009941 | GO:GO:0010468 | GO:GO:0016787 |
| GO:GO:0019538 | RefSeq:NP_567521.1 | ProteinID:OAP00853.1 | PFAM:PF00574 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00127 | PANTHER:PTHR10381 |
| PANTHER:PTHR10381:SF25 | UniProt:Q8LB10 | MEROPS:S14.001 | SUPFAM:SSF52096 | UniParc:UPI00000AC2D5 | SEG:seg |
Description
CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
Coordinates
chr4:-:9585283..9589376
Molecular Weight (calculated)
33442.3 Da
IEP (calculated)
9.745
GRAVY (calculated)
-0.208
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.