Factsheet for GSMUA_Achr9P24480_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71709	Canola	endoplasmic reticulum, extracellular	50.15	87.43
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	33.33	85.38
VIT_00s0204g00220.t01	Wine grape	plastid	64.56	73.63
PGSC0003DMT400067452	Potato	plastid	66.37	73.18
KRH57519	Soybean	plastid	66.67	73.03
KRH04225	Soybean	plastid	65.77	72.04
Bra040108.1-P	Field mustard	plastid	65.47	71.48
CDY42955	Canola	plastid	65.47	71.48
CDY09652	Canola	plastid	65.17	71.38
Solyc08g077890.2.1	Tomato	plastid	64.56	71.19
Bra012683.1-P	Field mustard	plastid	65.47	71.01
CDY35605	Canola	plastid	64.56	70.96
CDY09656	Canola	plastid	65.17	70.92
CDX90492	Canola	plastid	65.17	70.68
AT4G17040.1	Thale cress	plastid	64.56	70.49
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	33.33	65.68
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	30.33	63.52
GSMUA_Achr8P14970_001	Banana	mitochondrion	44.74	60.82
CDY43468	Canola	plastid	24.32	46.02
GSMUA_Achr4P06560_001	Banana	cytosol, plastid, vacuole	7.81	38.24
GSMUA_AchrUn_...	Banana	cytosol	20.42	33.5
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	21.62	32.73
GSMUA_Achr3P08150_001	Banana	plastid	32.73	32.34
GSMUA_Achr5P10890_001	Banana	plastid	25.23	31.46
GSMUA_Achr8P05270_001	Banana	plastid	21.62	27.07
GSMUA_Achr8P22320_001	Banana	plastid	24.02	26.67
GSMUA_Achr2P08390_001	Banana	plastid	29.43	24.62
GSMUA_Achr1P08260_001	Banana	plastid	21.02	24.39
GSMUA_Achr4P13550_001	Banana	plastid	21.32	19.24

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G24480_001	EnsemblPlants:GSMUA_Achr9P24480_001	EnsemblPlants:GSMUA_Achr9T24480_001	UniProt:M0U355	PFAM:PF00574
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	SUPFAM:SSF52096	UniParc:UPI0002950C3E	SEG:seg

Description

ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G24480_001]

Coordinates

chr9:-:29262183..29267706

Molecular Weight (calculated)

36673.4 Da

IEP (calculated)

9.944

GRAVY (calculated)

-0.138

Length

333 amino acids

Sequence
(BLAST)

001: MEVALSSQRL VSADSPQMLS ISPRSQGSGR WAPKRAAFGR PPVASSSRSC SLGSSLVSSP FVCGSVHGDF NGLKIRLPSL KLPVVSTGRR PTRGVVTMVI
101: PFLRGNAWEQ PPPDLASYLY KNRIVYLGMS LVPSVTELMM AEFLYLQYED VEKPIYLYIN STGTTKANVP LSRLIKISIT FNSTQGGEKL GYETEAFAIY
201: DVMSYVKPPI FTLCVGNAWG EAALLLAAGS KGNRAALPSS TIMIKQPIAR FQGQATDVEL ARKEIRNVKA ELVGLYSKHI GKSREQIEED IRRPKYFSPS
301: EAVEYGIIDK VLYNERGRED RSVVSDLKKA QLI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.