Factsheet for GSMUA_Achr4P13550_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06560_001	Banana	cytosol, plastid, vacuole	16.53	89.71
VIT_14s0006g01880.t01	Wine grape	plastid	60.43	69.69
KRH70450	Soybean	plastid	58.54	67.71
KRH01676	Soybean	plastid	58.81	67.39
Solyc02g091280.2.1	Tomato	plastid	54.74	65.37
AT1G66670.1	Thale cress	plastid	53.39	63.75
PGSC0003DMT400078756	Potato	plastid	53.12	62.42
CDX96137	Canola	plastid	51.76	61.02
Bra004177.1-P	Field mustard	plastid	51.49	60.7
CDY36212	Canola	plastid	50.68	59.74
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	27.91	46.82
GSMUA_AchrUn_...	Banana	cytosol	22.49	40.89
GSMUA_Achr8P22320_001	Banana	plastid	27.37	33.67
GSMUA_Achr5P10890_001	Banana	plastid	24.12	33.33
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	11.38	32.31
GSMUA_Achr8P05270_001	Banana	plastid	20.6	28.57
GSMUA_Achr8P14970_001	Banana	mitochondrion	16.8	25.31
GSMUA_Achr1P08260_001	Banana	plastid	19.51	25.09
GSMUA_Achr3P08150_001	Banana	plastid	20.6	22.55
GSMUA_Achr9P24480_001	Banana	plastid	19.24	21.32
GSMUA_Achr2P08390_001	Banana	plastid	20.33	18.84

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008236	GO:GO:0009507	GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009840	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G13550_001	EnsemblPlants:GSMUA_Achr4P13550_001	EnsemblPlants:GSMUA_Achr4T13550_001	UniProt:M0SNM0	HAMAP:MF_00444
PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF20
SUPFAM:SSF52096	TMHMM:TMhelix	UniParc:UPI000296D618	SEG:seg	:	:

Description

ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G13550_001]

Coordinates

chr4:-:10111458..10117243

Molecular Weight (calculated)

40142.5 Da

IEP (calculated)

9.899

GRAVY (calculated)

-0.328

Length

369 amino acids

Sequence
(BLAST)

001: MGRNGPTQPS NGVGHIYLFA YGLIPFAASL ARIEGRKGAK METIVAVSSS ASPSDKLISS ASSLFPHGFL FPSSSPRRLA VAPPRRQTRP PLRAAAALGR
101: RRTLSEGWDL SGSVPGAFRM PRFEEMDTTN TLLRQRIVFL GSQVDTMTAD LIISQLLLLD AEDQKKEIKL FINSPGGSVT AGMGIYDAMK LCKADVSTIC
201: LGLAASMGAF LLAAGTKGKR FCMPNARVMI HQPLGTAGGK ATEMGLQIKE MVYHKIKMNK ILSRITGKPE QQIELDTDRD NFMNPWEAKE YGLVDAVIDD
301: GKPGLVAPIA EATPPPKTRV WDLWKVDGSR KARQNLPSEE KLSQNGYKVD SNGDEDRGKE QPKEEPTTV

Best Arabidopsis Sequence Match ( AT1G66670.1 )
(BLAST)

001: MEMSLRLASS STSNPICLLN PGKNLNFPIR NHRIPKTSKP FCVRSSMSLS KPPRQTLSSN WDVSSFSIDS VAQSPSRLPS FEELDTTNML LRQRIVFLGS
101: QVDDMTADLV ISQLLLLDAE DSERDITLFI NSPGGSITAG MGIYDAMKQC KADVSTVCLG LAASMGAFLL ASGSKGKRYC MPNSKVMIHQ PLGTAGGKAT
201: EMSIRIREMM YHKIKLNKIF SRITGKPESE IESDTDRDNF LNPWEAKEYG LIDAVIDDGK PGLIAPIGDG TPPPKTKVWD LWKVEGTKKD NTNLPSERSM
301: TQNGYAAIE

Arabidopsis Description

CLPP3ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.